Variant report

Variant	rs10821295
Chromosome Location	chr9:96869147-96869148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96860355..96862707-chr9:96868776..96872890,3	K562	blood:
2	chr9:96864692..96867836-chr9:96868310..96870488,3	K562	blood:
3	chr9:96861323..96864485-chr9:96867388..96870622,3	K562	blood:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10821285	0.80[YRI][hapmap]
rs12341059	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7033898	0.89[YRI][hapmap]
rs72757596	0.89[AFR][1000 genomes]
rs7867925	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs9695457	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
3	nsv1043704	chr9:96816552-96873018	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
5	nsv893591	chr9:96849137-96883271	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv2761543	chr9:96857735-96875582	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10821295	FANCC	cis	parietal	SCAN

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96824200-96869600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:96829600-96872400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:96845600-96885400	Weak transcription	Gastric	stomach
4	chr9:96846000-96870600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:96849400-96869600	Weak transcription	HUVEC	blood vessel
6	chr9:96849400-96869800	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:96849400-96883800	Weak transcription	Brain Germinal Matrix	brain
8	chr9:96849600-96870400	Weak transcription	Fetal Lung	lung
9	chr9:96850600-96870000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:96857200-96871000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:96857200-96882800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:96859200-96869600	Weak transcription	HSMMtube	muscle
13	chr9:96859200-96880800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:96860200-96870200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:96860200-96876200	Weak transcription	Esophagus	oesophagus
16	chr9:96860400-96873400	Weak transcription	NHLF	lung
17	chr9:96860600-96870000	Weak transcription	A549	lung
18	chr9:96860600-96870600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:96860600-96870800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:96860600-96871000	Weak transcription	Brain Angular Gyrus	brain
21	chr9:96860600-96871000	Weak transcription	Right Ventricle	heart
22	chr9:96860600-96872800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:96860800-96869600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:96860800-96870600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr9:96860800-96870800	Weak transcription	HSMM	muscle
26	chr9:96860800-96870800	Weak transcription	NH-A	brain
27	chr9:96860800-96870800	Weak transcription	NHDF-Ad	bronchial
28	chr9:96860800-96870800	Weak transcription	NHEK	skin
29	chr9:96860800-96871000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr9:96860800-96871000	Weak transcription	HMEC	breast
31	chr9:96860800-96872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr9:96860800-96872800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:96860800-96886800	Weak transcription	Aorta	Aorta
34	chr9:96861000-96884000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:96861200-96870600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:96861200-96870600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:96861200-96871000	Weak transcription	Lung	lung
38	chr9:96861400-96871000	Weak transcription	Left Ventricle	heart
39	chr9:96861400-96875200	Weak transcription	Pancreas	Pancrea
40	chr9:96861400-96884600	Weak transcription	Ovary	ovary
41	chr9:96861600-96870800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr9:96862600-96870800	Weak transcription	Brain Substantia Nigra	brain
43	chr9:96862600-96870800	Weak transcription	Fetal Stomach	stomach
44	chr9:96862800-96871000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr9:96863600-96870800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:96864000-96871000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr9:96864200-96877600	Weak transcription	Primary T cells from cord blood	blood
48	chr9:96865600-96870800	Weak transcription	Fetal Muscle Leg	muscle
49	chr9:96865600-96870800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr9:96865800-96872800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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