Variant report

Variant	rs10825935
Chromosome Location	chr10:58694681-58694682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10825916	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12572501	0.82[EUR][1000 genomes]
rs12573519	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1536083	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1536084	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1536085	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1925291	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1925296	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551064	chr10:58457011-58702440	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv895511	chr10:58640650-58789387	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv895512	chr10:58640650-58834542	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv895513	chr10:58672533-58979792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58694600-58694800	ZNF genes & repeats	Gastric	stomach
2	chr10:58694600-58698000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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