Variant report

Variant	rs10828281
Chromosome Location	chr10:18449442-18449443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18440418..18442288-chr10:18448031..18451396,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10828279	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828282	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12357580	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12358164	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12414844	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2068357	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61844172	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054616	chr10:18433954-18451969	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:18435000-18454200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:18443800-18459000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:18444600-18451200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:18444600-18456000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:18444600-18457000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:18444600-18458400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:18444600-18466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:18444800-18451200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:18448000-18450800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:18448200-18453400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:18448400-18450000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:18448400-18451600	Weak transcription	Pancreas	Pancrea
15	chr10:18448400-18452800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:18448400-18454000	Weak transcription	Left Ventricle	heart
17	chr10:18448400-18454200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:18448400-18469000	Weak transcription	Right Ventricle	heart
19	chr10:18448600-18450000	Enhancers	Colon Smooth Muscle	Colon
20	chr10:18448600-18450400	Enhancers	Fetal Lung	lung
21	chr10:18448600-18452400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:18448600-18452400	Weak transcription	Ovary	ovary
23	chr10:18448600-18452600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:18448600-18452800	Weak transcription	Osteobl	bone
25	chr10:18448600-18454200	Weak transcription	Aorta	Aorta
26	chr10:18448800-18449800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:18448800-18450200	Enhancers	Hela-S3	cervix
28	chr10:18448800-18452000	Weak transcription	Fetal Stomach	stomach
29	chr10:18448800-18452400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:18448800-18452600	Weak transcription	NHLF	lung
31	chr10:18448800-18453200	Weak transcription	HSMM	muscle
32	chr10:18448800-18453800	Weak transcription	Fetal Brain Female	brain
33	chr10:18449000-18449800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:18449000-18452600	Weak transcription	Fetal Heart	heart
35	chr10:18449000-18452800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:18449000-18453600	Weak transcription	Fetal Brain Male	brain
37	chr10:18449200-18450000	Enhancers	NHDF-Ad	bronchial
38	chr10:18449400-18450000	Enhancers	Rectal Smooth Muscle	rectum

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