Variant report
| Variant | rs10828455 |
|---|---|
| Chromosome Location | chr10:23713015-23713016 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000165312 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10734047 | 0.88[AFR][1000 genomes] |
| rs10741027 | 0.91[AFR][1000 genomes] |
| rs10741028 | 0.88[AFR][1000 genomes] |
| rs10741029 | 0.82[AFR][1000 genomes] |
| rs11013507 | 0.86[AFR][1000 genomes] |
| rs12246098 | 0.88[AFR][1000 genomes] |
| rs12250542 | 0.88[AFR][1000 genomes] |
| rs1473079 | 0.88[AFR][1000 genomes] |
| rs1546521 | 0.88[AFR][1000 genomes] |
| rs1877324 | 0.88[AFR][1000 genomes] |
| rs2055920 | 0.88[AFR][1000 genomes] |
| rs2055921 | 0.84[AFR][1000 genomes] |
| rs2175500 | 0.88[AFR][1000 genomes] |
| rs2175501 | 0.88[AFR][1000 genomes] |
| rs4325223 | 0.88[AFR][1000 genomes] |
| rs4500392 | 0.88[AFR][1000 genomes] |
| rs4747477 | 0.86[AFR][1000 genomes] |
| rs4747478 | 0.88[AFR][1000 genomes] |
| rs4748888 | 0.94[AFR][1000 genomes] |
| rs4748893 | 0.88[AFR][1000 genomes] |
| rs4748894 | 0.88[AFR][1000 genomes] |
| rs4748898 | 0.88[AFR][1000 genomes] |
| rs6482279 | 0.88[AFR][1000 genomes] |
| rs6482280 | 0.88[AFR][1000 genomes] |
| rs6482285 | 0.88[AFR][1000 genomes] |
| rs6482286 | 0.88[AFR][1000 genomes] |
| rs7079567 | 0.88[AFR][1000 genomes] |
| rs7082637 | 0.91[AFR][1000 genomes] |
| rs7083824 | 0.83[AFR][1000 genomes] |
| rs7085009 | 0.88[AFR][1000 genomes] |
| rs7893165 | 0.88[AFR][1000 genomes] |
| rs7903159 | 0.88[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs7909037 | 0.91[AFR][1000 genomes] |
| rs7911376 | 0.88[AFR][1000 genomes] |
| rs7913300 | 0.80[AFR][1000 genomes] |
| rs7917515 | 0.88[AFR][1000 genomes] |
| rs7923271 | 0.91[AFR][1000 genomes] |
| rs907451 | 0.94[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv825305 | chr10:23698620-23740919 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:23712000-23719000 | Weak transcription | Stomach Mucosa | stomach |
