Variant report

Variant	rs10828832
Chromosome Location	chr10:25863964-25863965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10828829	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828830	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828831	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11014617	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11014618	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014619	0.84[AMR][1000 genomes]
rs12246035	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1335193	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1335194	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34874972	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749049	0.87[ASN][1000 genomes]
rs7094025	0.85[ASN][1000 genomes]
rs72790305	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv550227	chr10:25843019-25865744	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25861600-25873800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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