Variant report

Variant	rs10829306
Chromosome Location	chr10:27966101-27966102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17756619	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17756631	1.00[CEU][hapmap]
rs2505138	0.90[ASN][1000 genomes]
rs2637302	0.90[ASN][1000 genomes]
rs2815547	0.90[ASN][1000 genomes]
rs2815548	0.88[ASN][1000 genomes]
rs4405204	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4749259	0.84[EUR][1000 genomes]
rs7082165	0.82[EUR][1000 genomes]
rs7902371	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27953600-27968800	Weak transcription	Aorta	Aorta
2	chr10:27961200-27966400	Weak transcription	Fetal Lung	lung
3	chr10:27964400-27967000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:27964400-27967400	Weak transcription	Ovary	ovary
5	chr10:27965400-27967600	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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