Variant report

Variant	rs10831253
Chromosome Location	chr11:94357036-94357037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10831252	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11020858	0.96[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12276362	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7102628	0.84[AFR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10831253	HEPHL1	cis	cerebellum	SCAN
rs10831253	GPR83	cis	cerebellum	SCAN
rs10831253	MRE11A	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94325200-94357600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:94347600-94357200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:94347600-94359600	Weak transcription	Adipose Nuclei	Adipose
4	chr11:94348200-94358400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:94350200-94358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:94350200-94358200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:94352200-94357200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:94354000-94359600	Weak transcription	Aorta	Aorta
9	chr11:94354200-94359400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:94354400-94357400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:94354800-94357200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:94355400-94357400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:94355600-94357600	Weak transcription	Fetal Intestine Large	intestine
14	chr11:94355600-94357800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:94356000-94360200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:94356800-94357800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:94356800-94357800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:94356800-94357800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:94357000-94363800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links