Variant report

Variant	rs10832975
Chromosome Location	chr11:18743180-18743181
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:18742938..18746162-chr11:18746889..18750542,5	K562	blood:
2	chr11:18721064..18722963-chr11:18742444..18744897,2	MCF-7	breast:
3	chr11:18742601..18744357-chr11:18744570..18746681,3	K562	blood:
4	chr11:18741015..18744617-chr11:18749870..18752348,3	K562	blood:
5	chr11:18725792..18727506-chr11:18741119..18743990,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179057	Chromatin interaction
ENSG00000110786	Chromatin interaction
ENSG00000151117	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2278734	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv897028	chr11:18714623-18770822	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv525192	chr11:18722791-18793360	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1047371	chr11:18731473-18763037	Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv525452	chr11:18735947-18802503	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18742000-18743800	Flanking Active TSS	Duodenum Mucosa	Duodenum
2	chr11:18742000-18744000	Active TSS	Fetal Brain Male	brain
3	chr11:18742200-18743600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:18742200-18743800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr11:18742200-18743800	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr11:18742200-18743800	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr11:18742200-18743800	Flanking Active TSS	Fetal Intestine Small	intestine
8	chr11:18742200-18743800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr11:18742200-18743800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr11:18742200-18743800	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr11:18742200-18743800	Flanking Active TSS	Osteobl	bone
12	chr11:18742400-18743200	Flanking Active TSS	Thymus	Thymus
13	chr11:18742400-18743400	Active TSS	Primary T cells from cord blood	blood
14	chr11:18742400-18743400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr11:18742400-18743400	Active TSS	Right Atrium	heart
16	chr11:18742400-18743400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
17	chr11:18742400-18743600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:18742400-18743600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr11:18742400-18743600	Active TSS	Psoas Muscle	Psoas
20	chr11:18742400-18743600	Active TSS	NH-A	brain
21	chr11:18742400-18743800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:18742400-18743800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:18742400-18743800	Flanking Active TSS	Primary B cells from peripheral blood	blood
24	chr11:18742400-18743800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
25	chr11:18742400-18743800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:18742400-18743800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:18742400-18743800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:18742400-18743800	Flanking Active TSS	Colonic Mucosa	Colon
29	chr11:18742400-18743800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
30	chr11:18742400-18743800	Active TSS	Fetal Kidney	kidney
31	chr11:18742400-18743800	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr11:18742400-18743800	Flanking Active TSS	Fetal Muscle Trunk	muscle
33	chr11:18742400-18743800	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr11:18742400-18743800	Flanking Active TSS	Placenta	Placenta
35	chr11:18742400-18743800	Active TSS	Ovary	ovary
36	chr11:18742400-18743800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
37	chr11:18742400-18743800	Active TSS	A549	lung
38	chr11:18742400-18743800	Active TSS	HSMMtube	muscle
39	chr11:18742400-18743800	Flanking Active TSS	HUVEC	blood vessel
40	chr11:18742400-18743800	Active TSS	NHDF-Ad	bronchial
41	chr11:18742400-18744000	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr11:18742400-18744000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:18742400-18744000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:18742400-18744200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:18742400-18744200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:18742400-18744200	Active TSS	Fetal Brain Female	brain
47	chr11:18742600-18743200	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr11:18742600-18743200	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr11:18742600-18743200	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
50	chr11:18742600-18743200	Active TSS	Brain Angular Gyrus	brain

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