Variant report
| Variant | rs10834330 |
|---|---|
| Chromosome Location | chr11:24398195-24398196 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10834329 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10834331 | 0.89[EUR][1000 genomes] |
| rs10834332 | 0.91[EUR][1000 genomes] |
| rs11027854 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11027857 | 0.90[EUR][1000 genomes] |
| rs11027859 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11027860 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11027863 | 0.87[EUR][1000 genomes] |
| rs11027864 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11027867 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1157635 | 0.89[EUR][1000 genomes] |
| rs12416942 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1443040 | 0.92[EUR][1000 genomes] |
| rs1443041 | 0.89[EUR][1000 genomes] |
| rs1470276 | 0.89[EUR][1000 genomes] |
| rs1470277 | 0.88[EUR][1000 genomes] |
| rs1899538 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1899542 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs35846200 | 0.92[EUR][1000 genomes] |
| rs7122726 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7127372 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72875849 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72875860 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72875861 | 0.91[EUR][1000 genomes] |
| rs72875878 | 0.91[EUR][1000 genomes] |
| rs72875881 | 0.90[EUR][1000 genomes] |
| rs72875882 | 0.91[EUR][1000 genomes] |
| rs72875883 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1055026 | chr11:24151133-24737122 | Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037744 | chr11:24174588-24737122 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv983217 | chr11:24394261-24401348 | Enhancers | n/a | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10834330 | FMO6P | trans | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:24396800-24398200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
