Variant report

Variant	rs10834390
Chromosome Location	chr11:24594339-24594340
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10767210	0.80[ASN][1000 genomes]
rs10767211	0.82[ASN][1000 genomes]
rs10767215	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10834377	0.80[ASN][1000 genomes]
rs10834378	0.80[ASN][1000 genomes]
rs10834386	0.88[ASN][1000 genomes]
rs10834389	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834393	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11027995	0.80[ASN][1000 genomes]
rs11028002	0.80[ASN][1000 genomes]
rs11028003	0.80[ASN][1000 genomes]
rs11028007	0.82[ASN][1000 genomes]
rs11028012	0.88[ASN][1000 genomes]
rs11028028	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284708	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12293149	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1396844	0.80[ASN][1000 genomes]
rs1396848	0.82[ASN][1000 genomes]
rs1509613	0.88[ASN][1000 genomes]
rs1509614	0.88[ASN][1000 genomes]
rs1912136	0.83[EUR][1000 genomes]
rs1912139	0.80[ASN][1000 genomes]
rs1973574	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2403959	0.82[ASN][1000 genomes]
rs2403960	0.82[ASN][1000 genomes]
rs2403961	0.82[ASN][1000 genomes]
rs2403962	0.82[ASN][1000 genomes]
rs6484057	0.88[ASN][1000 genomes]
rs7105854	0.88[ASN][1000 genomes]
rs7115380	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7118822	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7121909	0.88[ASN][1000 genomes]
rs7131395	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs981895	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553820	chr11:24583891-24633951	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24594000-24594400	Enhancers	Fetal Brain Male	brain
2	chr11:24594200-24595000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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