Variant report

Variant	rs10834854
Chromosome Location	chr11:25950537-25950538
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10219417	0.86[ASN][1000 genomes]
rs10767474	0.86[ASN][1000 genomes]
rs10767477	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10834831	0.86[ASN][1000 genomes]
rs10834851	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11028987	0.86[ASN][1000 genomes]
rs11028988	0.86[ASN][1000 genomes]
rs11029029	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029037	0.81[EUR][1000 genomes]
rs12223840	0.87[EUR][1000 genomes]
rs12293502	0.83[ASN][1000 genomes]
rs12365180	0.81[EUR][1000 genomes]
rs1441493	0.87[EUR][1000 genomes]
rs1901415	0.86[ASN][1000 genomes]
rs2218913	0.86[ASN][1000 genomes]
rs2349596	0.86[ASN][1000 genomes]
rs2349602	0.85[EUR][1000 genomes]
rs2882200	0.87[EUR][1000 genomes]
rs3925975	0.87[EUR][1000 genomes]
rs41526047	0.87[EUR][1000 genomes]
rs4451684	0.87[EUR][1000 genomes]
rs4922748	0.86[ASN][1000 genomes]
rs4923324	0.90[EUR][1000 genomes]
rs4923325	0.90[EUR][1000 genomes]
rs7102091	0.85[EUR][1000 genomes]
rs7952716	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv897140	chr11:25905509-25991194	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv467775	chr11:25916225-25957544	Enhancers Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553896	chr11:25916225-25957544	Enhancers Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25948400-25951000	Enhancers	Fetal Lung	lung
2	chr11:25949400-25951600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:25949600-25951200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:25950400-25950600	Enhancers	Fetal Stomach	stomach

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