The 2.0 version of rSNPBase

Variant report

Variant rs10835554
Chromosome Location chr11:4080112-4080113
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:4051000-4080400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr11:4062000-4080400 Weak transcription Spleen Spleen
3 chr11:4066200-4104200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr11:4066400-4107800 Weak transcription Small Intestine intestine
5 chr11:4066600-4080200 Weak transcription Right Ventricle heart
6 chr11:4066600-4080400 Weak transcription Fetal Lung lung
7 chr11:4066600-4080400 Weak transcription Gastric stomach
8 chr11:4066600-4085800 Weak transcription Pancreas Pancrea
9 chr11:4067000-4087400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr11:4067800-4080400 Weak transcription Brain Hippocampus Middle brain
11 chr11:4067800-4080600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr11:4067800-4093200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr11:4068000-4080200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr11:4068000-4080200 Weak transcription Psoas Muscle Psoas
15 chr11:4070800-4108600 Weak transcription HSMM muscle
16 chr11:4071000-4083600 Weak transcription Fetal Brain Male brain
17 chr11:4071600-4080400 Weak transcription Aorta Aorta
18 chr11:4071800-4080600 Weak transcription Colonic Mucosa Colon
19 chr11:4073000-4093200 Weak transcription Fetal Intestine Small intestine
20 chr11:4075800-4083200 Strong transcription Primary T cells from cord blood blood
21 chr11:4076000-4080600 Weak transcription HSMMtube muscle
22 chr11:4076000-4087000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr11:4076200-4081600 Weak transcription A549 lung
24 chr11:4076200-4103000 Weak transcription Fetal Intestine Large intestine
25 chr11:4076600-4085200 Strong transcription Dnd41 blood
26 chr11:4076800-4081400 Strong transcription Skeletal Muscle Male skeletal muscle
27 chr11:4076800-4082600 Strong transcription Fetal Muscle Trunk muscle
28 chr11:4076800-4082600 Strong transcription Thymus Thymus
29 chr11:4076800-4083200 Strong transcription Liver Liver
30 chr11:4077200-4080600 Weak transcription Brain Angular Gyrus brain
31 chr11:4077400-4080400 Weak transcription HepG2 liver
32 chr11:4077600-4080200 Genic enhancers Monocytes-CD14+_RO01746 blood
33 chr11:4078000-4080200 Weak transcription Esophagus oesophagus
34 chr11:4078000-4080400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
35 chr11:4078000-4080400 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr11:4078000-4080400 Weak transcription Left Ventricle heart
37 chr11:4078000-4080600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr11:4078000-4080600 Weak transcription Brain Inferior Temporal Lobe brain
39 chr11:4078000-4093200 Weak transcription Brain Cingulate Gyrus brain
40 chr11:4078200-4080200 Enhancers Primary hematopoietic stem cells blood
41 chr11:4078200-4080600 Weak transcription Brain Anterior Caudate brain
42 chr11:4078400-4080400 Enhancers NHEK skin
43 chr11:4078600-4080200 Enhancers Primary B cells from cord blood blood
44 chr11:4078600-4080200 Weak transcription Stomach Smooth Muscle stomach
45 chr11:4078600-4080400 Weak transcription Duodenum Mucosa Duodenum
46 chr11:4078600-4080400 Weak transcription Fetal Muscle Leg muscle
47 chr11:4078600-4080400 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr11:4078600-4080600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr11:4078600-4081600 Enhancers HMEC breast
50 chr11:4078800-4080200 Enhancers Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015