Variant report

Variant	rs10836215
Chromosome Location	chr11:34426285-34426286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABTB2-1	chr11:34426210-34426496	NONHSAT018750

Extended variants
information (count: 35 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1008491	0.80[EUR][1000 genomes]
rs10836223	0.83[EUR][1000 genomes]
rs10836230	0.83[EUR][1000 genomes]
rs11032654	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11032661	0.92[EUR][1000 genomes]
rs11032667	0.92[EUR][1000 genomes]
rs11032669	0.91[EUR][1000 genomes]
rs11032670	0.92[EUR][1000 genomes]
rs11032671	0.92[EUR][1000 genomes]
rs11032695	0.83[EUR][1000 genomes]
rs12361866	0.92[EUR][1000 genomes]
rs12790004	0.92[EUR][1000 genomes]
rs12790378	0.92[EUR][1000 genomes]
rs12793666	0.82[EUR][1000 genomes]
rs12804506	0.92[EUR][1000 genomes]
rs12804689	0.92[EUR][1000 genomes]
rs12806377	0.91[EUR][1000 genomes]
rs12807961	0.80[EUR][1000 genomes]
rs12808450	0.80[EUR][1000 genomes]
rs17352313	0.91[EUR][1000 genomes]
rs34329347	0.83[EUR][1000 genomes]
rs34533645	0.83[EUR][1000 genomes]
rs35725681	0.83[EUR][1000 genomes]
rs55892947	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59090359	0.91[EUR][1000 genomes]
rs61880810	0.81[ASN][1000 genomes]
rs66679411	0.87[EUR][1000 genomes]
rs873466	0.92[EUR][1000 genomes]
rs910089	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv983151	chr11:34401342-34444667	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10836215	CAT	cis	Whole Blood	GTEx
rs10836215	CAT	Cis_1M	lymphoblastoid	RTeQTL
rs10836215	ABTB2	cis	Whole Blood	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34419000-34428600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34424800-34431000	Enhancers	Liver	Liver
3	chr11:34425200-34426400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:34425400-34428200	Weak transcription	HepG2	liver
5	chr11:34425600-34426600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:34425600-34435400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:34425800-34426600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:34425800-34426600	Enhancers	A549	lung
9	chr11:34426000-34426400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:34426000-34426400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr11:34426000-34426400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:34426000-34426400	Enhancers	Hela-S3	cervix
13	chr11:34426200-34426400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:34426200-34426400	Enhancers	Psoas Muscle	Psoas
15	chr11:34426200-34426400	Enhancers	GM12878-XiMat	blood
16	chr11:34426200-34426400	Enhancers	Osteobl	bone
17	chr11:34426200-34426600	Flanking Active TSS	NHDF-Ad	bronchial
18	chr11:34426200-34426600	Enhancers	NHEK	skin
19	chr11:34426200-34426800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:34426200-34427000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:34426200-34427000	Enhancers	K562	blood
22	chr11:34426200-34427400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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