Variant report

Variant	rs10836544
Chromosome Location	chr11:36404958-36404959
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:36404748-36405438	SK-N-MC	brain:	n/a	n/a
2	POLR2A	chr11:36404240-36405053	MCF10A-Er-Src	breast:	n/a	n/a
3	CTCF	chr11:36404820-36404970	HAc	cerebellar:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36393103..36395662-chr11:36402907..36405828,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255186	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11033602	1.00[YRI][hapmap]
rs11608110	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12421636	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421645	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3812774	1.00[YRI][hapmap]
rs72950073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950076	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72950079	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72950084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950090	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36399800-36406800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:36399800-36411800	Weak transcription	HSMM	muscle
3	chr11:36400000-36408000	Weak transcription	Thymus	Thymus
4	chr11:36400000-36409400	Weak transcription	Adipose Nuclei	Adipose
5	chr11:36400000-36409800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:36400000-36412400	Weak transcription	Osteobl	bone
7	chr11:36400000-36415600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:36400000-36425200	Weak transcription	Fetal Kidney	kidney
9	chr11:36400000-36425600	Weak transcription	HUVEC	blood vessel
10	chr11:36400200-36406800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:36400600-36407200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:36400600-36431200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:36400800-36443600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:36401000-36420200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:36401200-36408000	Weak transcription	Liver	Liver
17	chr11:36401400-36409000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:36401600-36405000	Enhancers	Brain Cingulate Gyrus	brain
19	chr11:36401600-36406800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:36401800-36409400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:36402000-36410000	Weak transcription	Placenta	Placenta
22	chr11:36402000-36424200	Weak transcription	Left Ventricle	heart
23	chr11:36402000-36431800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:36402200-36405200	Strong transcription	Fetal Intestine Large	intestine
25	chr11:36402200-36405600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr11:36402800-36406000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:36402800-36406400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr11:36402800-36406600	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:36403000-36405600	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr11:36403000-36406000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:36403000-36406600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:36403000-36407600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:36403000-36409800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:36403000-36415400	Weak transcription	NHEK	skin
35	chr11:36403000-36417800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:36403000-36438200	Weak transcription	Ovary	ovary
37	chr11:36403200-36405200	Enhancers	Brain Hippocampus Middle	brain
38	chr11:36403200-36405200	Strong transcription	Fetal Intestine Small	intestine
39	chr11:36403200-36406800	Weak transcription	Small Intestine	intestine
40	chr11:36403200-36409200	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr11:36403400-36406000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:36403600-36405000	Genic enhancers	Primary T cells fromperipheralblood	blood
43	chr11:36403800-36405000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr11:36403800-36405000	Strong transcription	HMEC	breast
45	chr11:36403800-36406200	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr11:36403800-36407600	Enhancers	Brain Substantia Nigra	brain
47	chr11:36404000-36405000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:36404200-36405000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:36404200-36405200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:36404200-36405600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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