Variant report

Variant	rs10836556
Chromosome Location	chr11:36439237-36439238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36432655..36434682-chr11:36437304..36439623,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10501154	0.91[CHB][hapmap]
rs10501155	0.91[CHB][hapmap];0.81[GIH][hapmap]
rs10836555	0.80[GIH][hapmap];0.87[AMR][1000 genomes]
rs7117655	0.81[GIH][hapmap]
rs744895	0.82[MEX][hapmap]
rs746761	0.86[CHB][hapmap]
rs746762	0.82[MEX][hapmap]
rs746763	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7951020	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10836556	CD59	cis	cerebellum	SCAN
rs10836556	EIF3M	cis	cerebellum	SCAN

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:36400800-36443600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:36407200-36441800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:36413000-36471000	Weak transcription	Aorta	Aorta
5	chr11:36413200-36441600	Weak transcription	HSMMtube	muscle
6	chr11:36414800-36475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:36420400-36453200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:36423400-36441800	Weak transcription	HMEC	breast
9	chr11:36425800-36441400	Weak transcription	Fetal Kidney	kidney
10	chr11:36431200-36453200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:36432000-36467800	Weak transcription	Esophagus	oesophagus
12	chr11:36432200-36442000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:36432600-36452200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:36432800-36440600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:36432800-36440600	Weak transcription	NHEK	skin
16	chr11:36433200-36448600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:36433400-36439600	Weak transcription	Liver	Liver
18	chr11:36433400-36442600	Weak transcription	Small Intestine	intestine
19	chr11:36433400-36452600	Weak transcription	Left Ventricle	heart
20	chr11:36433600-36439800	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:36433600-36442800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:36433800-36471400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:36434200-36441800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:36434600-36440600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr11:36434600-36441800	Weak transcription	Adipose Nuclei	Adipose
26	chr11:36435000-36439400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:36435000-36439600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:36435000-36441600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:36435000-36441600	Weak transcription	Fetal Thymus	thymus
30	chr11:36435000-36441800	Weak transcription	Osteobl	bone
31	chr11:36435000-36442400	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:36435000-36443200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr11:36435000-36443800	Weak transcription	Lung	lung
34	chr11:36435000-36447600	Weak transcription	Brain Substantia Nigra	brain
35	chr11:36435000-36448400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:36435200-36439400	Weak transcription	NH-A	brain
37	chr11:36435200-36441600	Weak transcription	HSMM	muscle
38	chr11:36435200-36453400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:36435200-36463200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:36436600-36441400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:36436800-36439800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:36436800-36441600	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr11:36436800-36441800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:36437000-36441600	Strong transcription	Fetal Intestine Small	intestine
45	chr11:36437000-36442200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr11:36437200-36441600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:36437400-36441800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:36437400-36441800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:36437600-36439400	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr11:36437600-36441800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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