Variant report

Variant	rs10836559
Chromosome Location	chr11:36451314-36451315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10836560	0.84[CHB][hapmap]
rs10836561	0.85[CHB][hapmap]
rs11033619	0.84[CHB][hapmap]
rs1863397	0.85[CHB][hapmap]
rs2422251	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs744895	0.94[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs744896	0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs746762	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs750940	0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs754005	0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7945831	0.85[CHB][hapmap]
rs7952013	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:36413000-36471000	Weak transcription	Aorta	Aorta
3	chr11:36414800-36475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:36420400-36453200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:36431200-36453200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:36432000-36467800	Weak transcription	Esophagus	oesophagus
7	chr11:36432600-36452200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:36433400-36452600	Weak transcription	Left Ventricle	heart
9	chr11:36433800-36471400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:36435200-36453400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:36435200-36463200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:36440800-36452200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:36442200-36451800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:36442600-36462200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:36443000-36453200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:36443600-36451400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:36443600-36451800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:36443600-36452600	Weak transcription	NHDF-Ad	bronchial
19	chr11:36443600-36453200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:36443800-36457400	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:36444000-36471400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:36444200-36471400	Weak transcription	Small Intestine	intestine
23	chr11:36444400-36453000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:36445600-36452400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:36447600-36453000	Weak transcription	Hela-S3	cervix
26	chr11:36447600-36471000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:36448400-36452600	Weak transcription	HSMMtube	muscle
28	chr11:36448400-36463800	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr11:36448400-36470600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:36448600-36452400	Strong transcription	Fetal Intestine Small	intestine
31	chr11:36448600-36470600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:36448600-36471000	Weak transcription	Fetal Thymus	thymus
33	chr11:36448600-36471000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr11:36448800-36452400	Weak transcription	A549	lung
35	chr11:36448800-36452400	Weak transcription	NH-A	brain
36	chr11:36448800-36452600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:36448800-36463000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:36448800-36471400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:36449000-36452600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:36449200-36453200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:36449200-36453400	Weak transcription	Adipose Nuclei	Adipose
42	chr11:36449200-36467800	Weak transcription	Ovary	ovary
43	chr11:36449200-36469200	Weak transcription	Placenta	Placenta
44	chr11:36449200-36471400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:36449400-36453000	Weak transcription	NHLF	lung
46	chr11:36449400-36453200	Weak transcription	Fetal Lung	lung
47	chr11:36449400-36457800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr11:36449400-36471200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr11:36449400-36471200	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr11:36449600-36452200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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