Variant report

Variant	rs10836563
Chromosome Location	chr11:36478114-36478115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36477306..36479015-chr11:36479369..36482198,2	K562	blood:
2	chr11:36477011..36480828-chr11:36482519..36484281,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55892321	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1046452	chr11:36460958-36503079	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv518499	chr11:36466814-36479789	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10836563	PRR5L	cis	parietal	SCAN

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36464400-36478800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:36467800-36478800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36469200-36480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:36470600-36482800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:36471600-36478400	Genic enhancers	Rectal Mucosa Donor 31	rectum
6	chr11:36471800-36506800	Weak transcription	Gastric	stomach
7	chr11:36471800-36506800	Weak transcription	Pancreas	Pancrea
8	chr11:36473000-36488000	Weak transcription	Liver	Liver
9	chr11:36473200-36478200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:36473200-36505600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:36473600-36478200	Enhancers	Osteobl	bone
12	chr11:36473600-36478600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:36473600-36478800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:36473600-36478800	Enhancers	Placenta	Placenta
15	chr11:36473800-36478200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:36473800-36478600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:36473800-36478600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:36473800-36478600	Enhancers	Right Atrium	heart
19	chr11:36473800-36478800	Enhancers	Ovary	ovary
20	chr11:36474000-36478400	Enhancers	Brain Substantia Nigra	brain
21	chr11:36474000-36478600	Enhancers	NH-A	brain
22	chr11:36474000-36478800	Enhancers	Right Ventricle	heart
23	chr11:36474200-36478400	Enhancers	Hela-S3	cervix
24	chr11:36474200-36486800	Weak transcription	Small Intestine	intestine
25	chr11:36474400-36483800	Weak transcription	Aorta	Aorta
26	chr11:36474800-36478400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:36474800-36511000	Weak transcription	Fetal Kidney	kidney
28	chr11:36475000-36478200	Genic enhancers	Primary T cells fromperipheralblood	blood
29	chr11:36475000-36478400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:36475200-36478200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:36475200-36478600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:36475200-36478800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr11:36475200-36486000	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:36475400-36478800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:36475400-36479400	Enhancers	Left Ventricle	heart
36	chr11:36475400-36481200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:36475400-36482200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:36475600-36478600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr11:36475600-36478600	Enhancers	Brain Hippocampus Middle	brain
40	chr11:36475600-36478800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:36475600-36478800	Enhancers	NHLF	lung
42	chr11:36475800-36478400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr11:36475800-36480800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:36475800-36482000	Weak transcription	Thymus	Thymus
45	chr11:36476000-36478200	Enhancers	Fetal Brain Male	brain
46	chr11:36476000-36478800	Enhancers	HSMMtube	muscle
47	chr11:36476000-36478800	Enhancers	NHDF-Ad	bronchial
48	chr11:36476200-36478200	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr11:36476200-36478600	Enhancers	Placenta Amnion	Placenta Amnion
50	chr11:36476200-36478800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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