Variant report

Variant	rs10838433
Chromosome Location	chr11:45233473-45233474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10769125	0.81[AMR][1000 genomes]
rs10769126	0.81[AMR][1000 genomes]
rs10769130	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3740781	0.83[AMR][1000 genomes]
rs3758725	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3781704	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56408918	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs714417	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs714927	0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10838433	SYT13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45202800-45234000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:45203000-45237000	Weak transcription	Small Intestine	intestine
3	chr11:45205800-45238800	Weak transcription	HSMMtube	muscle
4	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:45206000-45247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:45206600-45251600	Weak transcription	HepG2	liver
7	chr11:45209000-45235200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr11:45210000-45234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:45210200-45247600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:45214400-45234800	Weak transcription	A549	lung
12	chr11:45224800-45247800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:45226400-45234200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:45227000-45234000	Enhancers	Right Atrium	heart
15	chr11:45227400-45241600	Weak transcription	Primary B cells from cord blood	blood
16	chr11:45227400-45242600	Weak transcription	Liver	Liver
17	chr11:45227800-45247400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:45229000-45246600	Weak transcription	Primary T cells from cord blood	blood
19	chr11:45229200-45237400	Genic enhancers	Fetal Muscle Leg	muscle
20	chr11:45229800-45236800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr11:45230200-45235800	Strong transcription	Pancreas	Pancrea
22	chr11:45230400-45233600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr11:45230400-45234200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:45230600-45234000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:45231200-45235600	Strong transcription	Esophagus	oesophagus
26	chr11:45231400-45242400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:45231800-45235600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:45232000-45233600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr11:45232000-45234400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:45232000-45235200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:45232000-45239200	Weak transcription	NH-A	brain
32	chr11:45232000-45247600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:45232200-45233600	Enhancers	Right Ventricle	heart
34	chr11:45232200-45234000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:45232200-45234200	Weak transcription	Adipose Nuclei	Adipose
36	chr11:45232200-45235000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:45232200-45235200	Weak transcription	Stomach Mucosa	stomach
38	chr11:45232200-45235600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:45232200-45235600	Genic enhancers	Fetal Stomach	stomach
40	chr11:45232200-45235800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:45232200-45236200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:45232200-45236600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:45232200-45247600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr11:45232200-45247800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:45232400-45233600	Weak transcription	Brain Germinal Matrix	brain
46	chr11:45232400-45234000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:45232400-45234000	Weak transcription	Fetal Brain Female	brain
48	chr11:45232400-45235000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:45232400-45235200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:45232400-45235200	Strong transcription	Gastric	stomach

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