Variant report

Variant	rs10838611
Chromosome Location	chr11:46697199-46697200
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46696933..46699837-chr11:46720239..46724701,5	MCF-7	breast:
2	chr11:46678214..46680747-chr11:46696602..46698242,2	K562	blood:
3	chr11:46379173..46381825-chr11:46695646..46697480,2	MCF-7	breast:
4	chr11:46696407..46698533-chr11:46699721..46701247,2	MCF-7	breast:
5	chr11:46697171..46698171-chr11:47182788..47183296,2	K562	blood:
6	chr11:46619474..46621047-chr11:46695380..46697232,2	K562	blood:

Variant related genes	Relation type
ENSG00000175224	Chromatin interaction
ENSG00000175213	Chromatin interaction
ENSG00000175220	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10769204	0.88[AFR][1000 genomes]
rs10838610	0.90[AFR][1000 genomes]
rs4752926	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46667200-46717000	Strong transcription	Brain Germinal Matrix	brain
2	chr11:46689600-46706200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:46691400-46698800	Genic enhancers	Fetal Thymus	thymus
4	chr11:46691400-46699000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr11:46691600-46705600	Weak transcription	Fetal Brain Male	brain
6	chr11:46691600-46709200	Weak transcription	HUVEC	blood vessel
7	chr11:46691800-46699200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:46692600-46699000	Genic enhancers	Fetal Muscle Trunk	muscle
9	chr11:46693200-46697200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:46693200-46700200	Weak transcription	GM12878-XiMat	blood
11	chr11:46694400-46699600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:46694800-46697200	Genic enhancers	Thymus	Thymus
13	chr11:46695000-46697800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:46695000-46699000	Genic enhancers	Fetal Intestine Small	intestine
15	chr11:46695200-46697200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:46695200-46697600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:46695200-46698200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:46695200-46698600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:46695200-46699000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr11:46695200-46699000	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr11:46695200-46701600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr11:46695400-46697400	Enhancers	Primary B cells from cord blood	blood
23	chr11:46695400-46697400	Enhancers	Fetal Lung	lung
24	chr11:46695400-46697600	Enhancers	Esophagus	oesophagus
25	chr11:46695400-46698000	Enhancers	Liver	Liver
26	chr11:46695400-46698600	Genic enhancers	Brain Inferior Temporal Lobe	brain
27	chr11:46695400-46699800	Weak transcription	K562	blood
28	chr11:46695600-46697200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr11:46695600-46697400	Enhancers	H1 Cell Line	embryonic stem cell
30	chr11:46695600-46697400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr11:46695600-46697400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:46695600-46697400	Enhancers	Small Intestine	intestine
33	chr11:46695600-46697600	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr11:46695600-46698000	Enhancers	Fetal Intestine Large	intestine
35	chr11:46695600-46698000	Enhancers	Pancreas	Pancrea
36	chr11:46695600-46698200	Enhancers	Left Ventricle	heart
37	chr11:46695600-46699000	Enhancers	Primary B cells from peripheral blood	blood
38	chr11:46695600-46699000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:46695600-46699000	Enhancers	Right Atrium	heart
40	chr11:46695600-46700000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:46695600-46700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:46695600-46700200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr11:46695600-46700400	Genic enhancers	Spleen	Spleen
44	chr11:46695800-46697200	Enhancers	Colon Smooth Muscle	Colon
45	chr11:46695800-46697400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:46695800-46697400	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr11:46695800-46697600	Enhancers	Hela-S3	cervix
48	chr11:46695800-46697800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr11:46695800-46697800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:46695800-46698000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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