Variant report

Variant	rs10839259
Chromosome Location	chr11:49321410-49321411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10734597	0.87[ASN][1000 genomes]
rs10742937	0.82[ASN][1000 genomes]
rs10769571	0.87[ASN][1000 genomes]
rs10769573	0.88[ASN][1000 genomes]
rs10839248	0.83[ASN][1000 genomes]
rs10839251	0.88[ASN][1000 genomes]
rs10839253	0.87[ASN][1000 genomes]
rs10839254	0.82[ASN][1000 genomes]
rs10839255	0.87[ASN][1000 genomes]
rs10839257	0.88[ASN][1000 genomes]
rs11040311	0.88[ASN][1000 genomes]
rs11040322	0.88[ASN][1000 genomes]
rs11822117	0.87[ASN][1000 genomes]
rs11823826	0.87[ASN][1000 genomes]
rs11827867	0.82[ASN][1000 genomes]
rs12221758	0.86[ASN][1000 genomes]
rs1851981	0.87[ASN][1000 genomes]
rs1872610	0.87[ASN][1000 genomes]
rs2005014	0.87[ASN][1000 genomes]
rs2200497	0.86[ASN][1000 genomes]
rs2866347	0.87[ASN][1000 genomes]
rs2903253	0.86[ASN][1000 genomes]
rs2931177	0.87[ASN][1000 genomes]
rs3881244	0.88[ASN][1000 genomes]
rs3881245	0.88[ASN][1000 genomes]
rs4088771	0.87[ASN][1000 genomes]
rs4303234	0.86[ASN][1000 genomes]
rs4373925	0.86[ASN][1000 genomes]
rs596754	0.81[ASN][1000 genomes]
rs597683	0.81[ASN][1000 genomes]
rs600974	0.81[ASN][1000 genomes]
rs611931	0.81[ASN][1000 genomes]
rs628194	0.81[ASN][1000 genomes]
rs636059	0.81[ASN][1000 genomes]
rs6485971	0.84[ASN][1000 genomes]
rs650826	0.81[ASN][1000 genomes]
rs7103267	0.88[ASN][1000 genomes]
rs7103270	0.88[ASN][1000 genomes]
rs7106905	0.88[ASN][1000 genomes]
rs7111262	0.87[ASN][1000 genomes]
rs7114817	0.87[ASN][1000 genomes]
rs7115507	0.88[ASN][1000 genomes]
rs7117025	0.87[ASN][1000 genomes]
rs7118094	0.86[ASN][1000 genomes]
rs7118378	0.88[ASN][1000 genomes]
rs7118379	0.86[ASN][1000 genomes]
rs7121968	0.87[ASN][1000 genomes]
rs7122073	0.87[ASN][1000 genomes]
rs7125691	0.88[ASN][1000 genomes]
rs7131181	0.87[ASN][1000 genomes]
rs7131190	0.87[ASN][1000 genomes]
rs7481212	0.87[ASN][1000 genomes]
rs7925859	0.88[ASN][1000 genomes]
rs7935256	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv554347	chr11:49111467-49862647	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1044070	chr11:49147743-49448774	Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv525454	chr11:49156039-49570587	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv518571	chr11:49162948-49627833	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2758269	chr11:49212237-49468966	Bivalent/Poised TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2759825	chr11:49212237-49468966	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv972016	chr11:49246163-49330536	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2757442	chr11:49281916-49398973	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv2756709	chr11:49304358-49398973	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv3514992	chr11:49305276-49332374	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv3514993	chr11:49305276-49332374	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv3514472	chr11:49306026-49363024	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv3514471	chr11:49306608-49361878	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv3514473	chr11:49306608-49361878	Enhancers Flanking Active TSS Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
16	nsv442230	chr11:49307804-49360691	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv3693082	chr11:49310952-49358347	Enhancers Flanking Active TSS Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
18	nsv467875	chr11:49310952-49438332	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv554354	chr11:49310952-49438332	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
20	esv2762911	chr11:49313235-49388513	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:49320600-49322000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr11:49320600-49322200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:49320600-49322400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:49320800-49321800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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