Variant report

Variant	rs10839270
Chromosome Location	chr11:49387337-49387338
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10734597	0.86[EUR][1000 genomes]
rs10769571	0.82[EUR][1000 genomes]
rs10769573	0.86[EUR][1000 genomes]
rs10769576	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10839255	0.82[EUR][1000 genomes]
rs10839257	0.81[EUR][1000 genomes]
rs10839271	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11040322	0.82[EUR][1000 genomes]
rs11040359	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs11040364	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11822117	0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs12294396	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12416787	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1851981	0.82[EUR][1000 genomes]
rs1917308	0.88[ASN][1000 genomes]
rs202713	0.83[JPT][hapmap]
rs2091206	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2866347	0.82[EUR][1000 genomes]
rs4088771	0.81[EUR][1000 genomes]
rs4109834	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4297465	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106905	0.82[EUR][1000 genomes]
rs7111262	0.86[EUR][1000 genomes]
rs7113355	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7115507	0.86[EUR][1000 genomes]
rs7118094	0.80[EUR][1000 genomes]
rs7118273	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7118379	0.80[EUR][1000 genomes]
rs7122073	0.82[EUR][1000 genomes]
rs7125691	0.81[EUR][1000 genomes]
rs7481212	0.86[EUR][1000 genomes]
rs7925859	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv554347	chr11:49111467-49862647	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1044070	chr11:49147743-49448774	Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv525454	chr11:49156039-49570587	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv518571	chr11:49162948-49627833	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2758269	chr11:49212237-49468966	Bivalent/Poised TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2759825	chr11:49212237-49468966	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2757442	chr11:49281916-49398973	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
9	esv2756709	chr11:49304358-49398973	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
10	nsv467875	chr11:49310952-49438332	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv554354	chr11:49310952-49438332	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv2762911	chr11:49313235-49388513	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv972017	chr11:49356454-49418958	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv554355	chr11:49357043-49438332	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv2761671	chr11:49359619-49414562	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
16	nsv897485	chr11:49370834-49458055	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv897486	chr11:49373782-49688837	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:49386200-49387800	Enhancers	Liver	Liver
2	chr11:49386800-49387600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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