Variant report

Variant	rs10840216
Chromosome Location	chr11:9368049-9368050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9363321..9365351-chr11:9367412..9370052,2	K562	blood:
2	chr11:9367453..9371339-chr11:9383916..9387622,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11600147	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11602662	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11602693	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11604110	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4910040	0.90[AFR][1000 genomes]
rs4910041	0.96[AFR][1000 genomes]
rs4910042	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4910455	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6486282	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7104373	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7926348	0.97[EUR][1000 genomes]
rs7931959	0.97[EUR][1000 genomes]
rs7934962	0.81[EUR][1000 genomes]
rs7935301	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	nsv521969	chr11:9334961-9379005	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv975322	chr11:9363750-9395226	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9351200-9368800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:9353200-9368800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:9365800-9368600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:9365800-9368800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:9365800-9368800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:9366000-9368400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr11:9366000-9368400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:9366000-9368400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:9366000-9368800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:9366200-9368400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:9366200-9368400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:9366200-9368400	Weak transcription	Fetal Heart	heart
13	chr11:9366200-9368600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:9366200-9368600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:9366400-9368200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:9367200-9368800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:9368000-9368200	Enhancers	Thymus	Thymus
18	chr11:9368000-9369800	Enhancers	Primary T cells from cord blood	blood
19	chr11:9368000-9369800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr11:9368000-9370000	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links