Variant report

Variant	rs10840328
Chromosome Location	chr11:9952193-9952194
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11042549	0.87[ASN][1000 genomes]
rs1913159	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35396321	0.85[AMR][1000 genomes]
rs4498988	0.80[AMR][1000 genomes]
rs4616018	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4910082	0.87[ASN][1000 genomes]
rs4910083	0.87[ASN][1000 genomes]
rs7102482	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7125054	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7125856	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7945547	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1041148	chr11:9927980-9954537	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
2	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
3	chr11:9910000-9954600	Weak transcription	Pancreas	Pancrea
4	chr11:9917600-9952400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:9917800-9952600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:9923400-9952200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:9925400-9952200	Weak transcription	Lung	lung
8	chr11:9929200-9966800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:9929600-9953000	Weak transcription	HSMMtube	muscle
10	chr11:9934800-9952200	Weak transcription	Fetal Stomach	stomach
11	chr11:9941600-9952400	Weak transcription	Fetal Brain Female	brain
12	chr11:9942200-9952200	Weak transcription	Fetal Intestine Large	intestine
13	chr11:9943400-9980600	Weak transcription	Primary T cells from cord blood	blood
14	chr11:9943600-9952200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:9944600-9952800	Weak transcription	Liver	Liver
16	chr11:9944800-9952200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:9944800-9952400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:9944800-9952400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:9944800-9961000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:9944800-9969000	Weak transcription	Ovary	ovary
21	chr11:9945000-9954000	Weak transcription	HMEC	breast
22	chr11:9945000-9967600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:9945400-9952200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:9945400-9964800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:9945600-9955200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:9945600-9958400	Weak transcription	NHDF-Ad	bronchial
27	chr11:9946400-9952200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:9946600-9952200	Weak transcription	Fetal Intestine Small	intestine
29	chr11:9949000-9952200	Weak transcription	Esophagus	oesophagus
30	chr11:9950200-9980400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:9950600-9952400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:9950600-9952400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:9951000-9953000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:9951200-9952800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:9951200-9952800	Strong transcription	Adipose Nuclei	Adipose
36	chr11:9951200-9955000	Weak transcription	Right Ventricle	heart
37	chr11:9951400-9952400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:9951400-9952400	Strong transcription	Placenta	Placenta
39	chr11:9951600-9953000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:9951600-9954400	Weak transcription	Brain Angular Gyrus	brain
41	chr11:9951800-9952400	Enhancers	HepG2	liver
42	chr11:9951800-9952600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:9951800-9952800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr11:9951800-9953000	Strong transcription	Stomach Smooth Muscle	stomach
45	chr11:9952000-9952200	Active TSS	K562	blood
46	chr11:9952000-9952600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
47	chr11:9952000-9952600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:9952000-9952800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:9952000-9953000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:9952000-9953000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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