Variant report

Variant	rs10840422
Chromosome Location	chr11:10491741-10491742
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10840419	0.87[ASN][1000 genomes]
rs10840420	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840421	0.93[ASN][1000 genomes]
rs11042811	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042812	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042830	0.83[ASN][1000 genomes]
rs11602632	0.86[EUR][1000 genomes]
rs11604780	0.86[EUR][1000 genomes]
rs11604833	0.86[EUR][1000 genomes]
rs11604838	0.86[EUR][1000 genomes]
rs11605232	0.82[EUR][1000 genomes]
rs11606703	0.86[EUR][1000 genomes]
rs2071020	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6484290	0.86[EUR][1000 genomes]
rs7111970	0.87[EUR][1000 genomes]
rs7112321	0.86[EUR][1000 genomes]
rs7929999	0.85[EUR][1000 genomes]
rs899010	0.81[ASN][1000 genomes]
rs936513	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs936514	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10473200-10512000	Weak transcription	Aorta	Aorta
2	chr11:10478400-10500000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:10478400-10502800	Weak transcription	Pancreas	Pancrea
4	chr11:10478800-10493600	Weak transcription	HSMM	muscle
5	chr11:10478800-10511600	Weak transcription	Psoas Muscle	Psoas
6	chr11:10479000-10502800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:10479800-10519400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:10481200-10494600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:10483400-10500600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:10484200-10509600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:10484200-10514800	Weak transcription	Colonic Mucosa	Colon
12	chr11:10485000-10515200	Weak transcription	Liver	Liver
13	chr11:10485200-10501000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:10485400-10498600	Weak transcription	GM12878-XiMat	blood
15	chr11:10485600-10495800	Weak transcription	Spleen	Spleen
16	chr11:10485600-10496800	Weak transcription	NHLF	lung
17	chr11:10485600-10500400	Weak transcription	Adipose Nuclei	Adipose
18	chr11:10485600-10500800	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:10485600-10508200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:10485800-10495000	Weak transcription	Gastric	stomach
21	chr11:10485800-10495800	Weak transcription	Placenta	Placenta
22	chr11:10485800-10497200	Weak transcription	Lung	lung
23	chr11:10485800-10498400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:10485800-10511600	Weak transcription	Osteobl	bone
25	chr11:10486000-10504800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:10486200-10497000	Weak transcription	Brain Angular Gyrus	brain
27	chr11:10486200-10501200	Weak transcription	NHEK	skin
28	chr11:10486400-10495800	Weak transcription	Brain Anterior Caudate	brain
29	chr11:10486600-10495200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:10486600-10498800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:10486600-10502600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:10486800-10495600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:10486800-10497200	Weak transcription	Brain Substantia Nigra	brain
34	chr11:10486800-10509600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:10486800-10515600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:10487200-10495400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:10487200-10495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:10487200-10495800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr11:10487200-10496600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:10487200-10503000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:10487200-10506200	Weak transcription	Dnd41	blood
42	chr11:10487400-10495000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:10487400-10495000	Weak transcription	K562	blood
44	chr11:10487400-10496800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:10487400-10500400	Weak transcription	Esophagus	oesophagus
46	chr11:10487600-10495000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:10487600-10495000	Weak transcription	Primary B cells from cord blood	blood
48	chr11:10487600-10496800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:10488000-10494600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr11:10488000-10494800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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