Variant report

Variant	rs10840614
Chromosome Location	chr12:122191490-122191491
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10840615	0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs2720030	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs28651018	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28655666	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	nsv1040169	chr12:122096825-122209555	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv899566	chr12:122167095-122265106	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	97 gene(s)	inside rSNPs	diseases
4	esv2469781	chr12:122191490-122191490	Genic enhancers Weak transcription Strong transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122152200-122191600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr12:122152200-122191600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr12:122152200-122200200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr12:122154200-122200400	Weak transcription	Psoas Muscle	Psoas
5	chr12:122159400-122194800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:122174200-122191800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr12:122179800-122211000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr12:122183800-122224400	Weak transcription	Small Intestine	intestine
9	chr12:122184800-122191600	Weak transcription	Brain Substantia Nigra	brain
10	chr12:122184800-122208000	Weak transcription	Colonic Mucosa	Colon
11	chr12:122186200-122193600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:122186200-122194000	Strong transcription	Fetal Brain Female	brain
13	chr12:122186200-122197400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr12:122186600-122192200	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:122186600-122200400	Weak transcription	Right Atrium	heart
16	chr12:122186800-122191600	Weak transcription	Spleen	Spleen
17	chr12:122186800-122191800	Weak transcription	Left Ventricle	heart
18	chr12:122186800-122197200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:122187000-122192200	Weak transcription	Brain Angular Gyrus	brain
20	chr12:122187000-122192200	Weak transcription	Fetal Brain Male	brain
21	chr12:122187000-122192600	Weak transcription	NHDF-Ad	bronchial
22	chr12:122187000-122195200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr12:122187000-122199600	Strong transcription	Fetal Stomach	stomach
24	chr12:122187000-122207600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr12:122187000-122208200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:122187200-122191600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr12:122187200-122191800	Weak transcription	Fetal Kidney	kidney
28	chr12:122187200-122203400	Weak transcription	Hela-S3	cervix
29	chr12:122187200-122205600	Weak transcription	Fetal Lung	lung
30	chr12:122187400-122194600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr12:122187400-122198000	Strong transcription	Fetal Intestine Small	intestine
32	chr12:122187400-122200200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr12:122187400-122203400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr12:122187400-122213800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr12:122187400-122213800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr12:122187600-122191600	Weak transcription	Brain Hippocampus Middle	brain
37	chr12:122187600-122194600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr12:122188000-122192200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr12:122188200-122194600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr12:122188400-122194400	Weak transcription	NH-A	brain
41	chr12:122188400-122194400	Weak transcription	NHEK	skin
42	chr12:122188400-122194600	Weak transcription	HMEC	breast
43	chr12:122188400-122195800	Weak transcription	Primary T cells from cord blood	blood
44	chr12:122188400-122203400	Weak transcription	Osteobl	bone
45	chr12:122188400-122205600	Weak transcription	Aorta	Aorta
46	chr12:122188400-122207400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr12:122188600-122194000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr12:122188600-122199200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr12:122188800-122191600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr12:122188800-122191600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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