Variant report

Variant	rs10840626
Chromosome Location	chr12:122307554-122307555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:122302899..122304532-chr12:122306563..122308077,2	K562	blood:
2	chr12:122277629..122280241-chr12:122306316..122307836,2	K562	blood:
3	chr12:122306240..122308217-chr12:122309790..122311950,3	K562	blood:
4	chr12:122236590..122238934-chr12:122306343..122308467,2	MCF-7	breast:
5	chr12:122302034..122304399-chr12:122306279..122308063,2	K562	blood:

Variant related genes	Relation type
ENSG00000212694	Chromatin interaction
ENSG00000139725	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10840627	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11043222	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11043226	0.90[AMR][1000 genomes]
rs11502392	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1154510	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1154513	0.81[EUR][1000 genomes]
rs1154515	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11614623	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1185260	0.81[EUR][1000 genomes]
rs1667580	0.82[EUR][1000 genomes]
rs1667583	0.82[EUR][1000 genomes]
rs1667584	0.81[EUR][1000 genomes]
rs1678951	0.81[EUR][1000 genomes]
rs1678967	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1678969	0.82[EUR][1000 genomes]
rs1720067	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1795967	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1947826	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2101017	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2230681	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247139	0.82[EUR][1000 genomes]
rs2247291	0.80[ASN][1000 genomes]
rs2309274	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2596137	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2596144	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2620332	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2620340	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2688412	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2707056	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2707075	0.88[ASN][1000 genomes]
rs4760099	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs693277	0.81[EUR][1000 genomes]
rs7314056	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs895958	0.82[EUR][1000 genomes]
rs895959	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9668191	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	nsv916686	chr12:122240149-122714056	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv899568	chr12:122254713-122456524	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv34001	chr12:122298737-122521637	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122300200-122310800	Weak transcription	Placenta	Placenta
2	chr12:122300400-122309400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:122301600-122312800	Weak transcription	Liver	Liver
4	chr12:122301600-122312800	Weak transcription	HepG2	liver
5	chr12:122304800-122310800	Weak transcription	NHDF-Ad	bronchial
6	chr12:122305000-122308800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:122305000-122310200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:122305400-122310200	Weak transcription	Osteobl	bone
9	chr12:122305400-122310600	Weak transcription	Fetal Brain Male	brain
10	chr12:122306200-122311000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr12:122306600-122310800	Weak transcription	Monocytes-CD14+_RO01746	blood

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