Variant report

Variant	rs10841516
Chromosome Location	chr12:20573687-20573688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10505865	0.87[ASN][1000 genomes]
rs10732533	0.89[ASN][1000 genomes]
rs10732534	0.89[ASN][1000 genomes]
rs10743370	0.82[ASN][1000 genomes]
rs10743372	0.89[ASN][1000 genomes]
rs10743373	0.89[ASN][1000 genomes]
rs10743374	0.89[ASN][1000 genomes]
rs10770649	0.92[ASN][1000 genomes]
rs10770650	0.98[ASN][1000 genomes]
rs10770651	0.87[ASN][1000 genomes]
rs10770652	1.00[ASN][1000 genomes]
rs10770653	0.89[ASN][1000 genomes]
rs10770654	0.86[ASN][1000 genomes]
rs10770656	0.97[ASN][1000 genomes]
rs10841501	0.82[ASN][1000 genomes]
rs10841509	0.93[ASN][1000 genomes]
rs10841510	0.97[ASN][1000 genomes]
rs10841512	0.87[ASN][1000 genomes]
rs10841513	1.00[ASN][1000 genomes]
rs11045203	0.92[ASN][1000 genomes]
rs11045206	0.97[ASN][1000 genomes]
rs11045207	0.97[ASN][1000 genomes]
rs11045211	0.95[ASN][1000 genomes]
rs11045218	0.97[ASN][1000 genomes]
rs11045220	0.97[ASN][1000 genomes]
rs11045221	0.97[ASN][1000 genomes]
rs11045222	0.95[ASN][1000 genomes]
rs11045223	0.98[ASN][1000 genomes]
rs11045224	0.87[ASN][1000 genomes]
rs11045225	0.87[ASN][1000 genomes]
rs11045226	0.87[ASN][1000 genomes]
rs11045227	0.89[ASN][1000 genomes]
rs11045228	0.89[ASN][1000 genomes]
rs11045230	1.00[ASN][1000 genomes]
rs12297116	0.98[ASN][1000 genomes]
rs12370745	0.89[ASN][1000 genomes]
rs12370763	0.82[ASN][1000 genomes]
rs12372457	0.86[ASN][1000 genomes]
rs1348583	0.89[ASN][1000 genomes]
rs1444628	0.87[ASN][1000 genomes]
rs1444629	0.87[ASN][1000 genomes]
rs1444630	0.87[ASN][1000 genomes]
rs1444634	0.87[ASN][1000 genomes]
rs1444635	0.87[ASN][1000 genomes]
rs1444641	0.86[ASN][1000 genomes]
rs1444643	0.87[ASN][1000 genomes]
rs1444644	0.87[ASN][1000 genomes]
rs1444645	0.87[ASN][1000 genomes]
rs1444646	0.89[ASN][1000 genomes]
rs16922851	0.91[ASN][1000 genomes]
rs1838447	0.87[ASN][1000 genomes]
rs1838448	0.89[ASN][1000 genomes]
rs4762955	0.87[ASN][1000 genomes]
rs5014033	0.89[ASN][1000 genomes]
rs5014034	0.89[ASN][1000 genomes]
rs5014035	0.89[ASN][1000 genomes]
rs5014036	0.89[ASN][1000 genomes]
rs5014037	0.89[ASN][1000 genomes]
rs5014039	0.89[ASN][1000 genomes]
rs5014040	0.89[ASN][1000 genomes]
rs60593141	0.89[ASN][1000 genomes]
rs60977432	0.97[ASN][1000 genomes]
rs6487083	0.89[ASN][1000 genomes]
rs6487084	0.89[ASN][1000 genomes]
rs6487085	0.89[ASN][1000 genomes]
rs6487086	0.89[ASN][1000 genomes]
rs7136586	0.98[ASN][1000 genomes]
rs71450706	0.87[ASN][1000 genomes]
rs7310385	0.87[ASN][1000 genomes]
rs7314448	0.89[ASN][1000 genomes]
rs73232485	0.88[ASN][1000 genomes]
rs7954501	0.87[ASN][1000 genomes]
rs7957567	0.87[ASN][1000 genomes]
rs7967538	0.87[ASN][1000 genomes]
rs978349	0.87[ASN][1000 genomes]
rs9805045	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048067	chr12:20363755-20874845	Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541408	chr12:20363755-20874845	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1046870	chr12:20509914-20711535	Active TSS Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
4	nsv541409	chr12:20509914-20711535	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
5	nsv1042315	chr12:20531641-20629866	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20556600-20582400	Weak transcription	Osteobl	bone
2	chr12:20558600-20588000	Weak transcription	HUVEC	blood vessel
3	chr12:20559800-20577800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:20564800-20573800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr12:20566800-20576200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr12:20567200-20574400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr12:20568200-20588600	Weak transcription	Small Intestine	intestine
8	chr12:20568600-20588800	Weak transcription	Fetal Muscle Leg	muscle
9	chr12:20568600-20595400	Weak transcription	Pancreas	Pancrea
10	chr12:20568800-20579400	Weak transcription	Adipose Nuclei	Adipose
11	chr12:20569000-20577800	Weak transcription	NHDF-Ad	bronchial
12	chr12:20569200-20574200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:20571400-20575200	Weak transcription	Psoas Muscle	Psoas
14	chr12:20571600-20574400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:20572800-20573800	Enhancers	Left Ventricle	heart
16	chr12:20572800-20575200	Enhancers	Fetal Intestine Large	intestine
17	chr12:20573000-20574200	Enhancers	Fetal Intestine Small	intestine
18	chr12:20573200-20573800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr12:20573200-20573800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr12:20573200-20573800	Enhancers	Duodenum Mucosa	Duodenum
21	chr12:20573200-20574800	Enhancers	Colon Smooth Muscle	Colon
22	chr12:20573200-20574800	Enhancers	Rectal Smooth Muscle	rectum
23	chr12:20573200-20577800	Weak transcription	Aorta	Aorta
24	chr12:20573400-20574000	Enhancers	Fetal Kidney	kidney
25	chr12:20573400-20575400	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr12:20573600-20573800	Active TSS	Rectal Mucosa Donor 31	rectum
27	chr12:20573600-20574000	Enhancers	Hela-S3	cervix
28	chr12:20573600-20574200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr12:20573600-20574800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr12:20573600-20576600	Weak transcription	Right Ventricle	heart

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