Variant report

Variant	rs10841906
Chromosome Location	chr12:22027240-22027241
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10841902	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1492137	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1965033	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3782668	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4148669	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1051073	chr12:21910875-22271209	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv470275	chr12:21938544-22126314	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1847099	chr12:22003544-22035425	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv898899	chr12:22024093-22044210	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21995600-22034800	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:22014800-22034800	Weak transcription	Ovary	ovary
3	chr12:22022400-22028600	Strong transcription	Liver	Liver
4	chr12:22023600-22034800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr12:22024400-22034800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr12:22024800-22037000	Weak transcription	Left Ventricle	heart
7	chr12:22024800-22044000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr12:22024800-22044800	Weak transcription	Aorta	Aorta
9	chr12:22025000-22033600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:22025800-22034600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:22026400-22027800	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr12:22026600-22027600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:22026600-22028600	Strong transcription	Adipose Nuclei	Adipose
14	chr12:22026800-22029400	Weak transcription	Fetal Heart	heart
15	chr12:22027000-22027600	Strong transcription	Psoas Muscle	Psoas
16	chr12:22027000-22034600	Weak transcription	Fetal Muscle Leg	muscle
17	chr12:22027000-22041000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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