The 2.0 version of rSNPBase

Variant report

Variant rs10842171
Chromosome Location chr12:8878023-8878024
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:8852600-8880000 Weak transcription HMEC breast
2 chr12:8852800-8908600 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr12:8853200-8934000 Weak transcription K562 blood
4 chr12:8860000-8881600 Weak transcription Spleen Spleen
5 chr12:8862200-8880000 Weak transcription Pancreas Pancrea
6 chr12:8862400-8880000 Weak transcription Esophagus oesophagus
7 chr12:8862400-8894800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr12:8862400-8895000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr12:8862400-8902400 Weak transcription Primary T cells fromperipheralblood blood
10 chr12:8862600-8879000 Weak transcription Duodenum Mucosa Duodenum
11 chr12:8862600-8894800 Weak transcription Muscle Satellite Cultured Cells --
12 chr12:8862800-8879600 Weak transcription Primary neutrophils fromperipheralblood blood
13 chr12:8862800-8880200 Weak transcription Primary monocytes fromperipheralblood blood
14 chr12:8862800-8881800 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr12:8862800-8905400 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr12:8862800-8908000 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr12:8865000-8895200 Weak transcription Psoas Muscle Psoas
18 chr12:8865400-8878600 Weak transcription Gastric stomach
19 chr12:8865600-8887600 Weak transcription Rectal Smooth Muscle rectum
20 chr12:8865800-8888600 Weak transcription Brain Anterior Caudate brain
21 chr12:8866000-8880000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr12:8866000-8895000 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr12:8866000-8896600 Weak transcription Brain Hippocampus Middle brain
24 chr12:8866200-8879000 Strong transcription Cortex derived primary cultured neurospheres brain
25 chr12:8867200-8883600 Weak transcription ES-WA7 Cell Line embryonic stem cell
26 chr12:8868200-8881600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr12:8868200-8905400 Weak transcription Right Ventricle heart
28 chr12:8868800-8892800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr12:8870400-8881600 Strong transcription Fetal Muscle Leg muscle
30 chr12:8870600-8883600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr12:8871800-8878400 Strong transcription Fetal Adrenal Gland Adrenal Gland
32 chr12:8872000-8896600 Weak transcription HUVEC blood vessel
33 chr12:8872400-8878800 Strong transcription Thymus Thymus
34 chr12:8874200-8888200 Weak transcription NHEK skin
35 chr12:8874200-8894800 Weak transcription HSMM muscle
36 chr12:8874400-8885400 Weak transcription NH-A brain
37 chr12:8874400-8888600 Weak transcription A549 lung
38 chr12:8874400-8892000 Weak transcription Primary B cells from peripheral blood blood
39 chr12:8875000-8878600 Weak transcription Placenta Placenta
40 chr12:8875000-8880600 Weak transcription Fetal Thymus thymus
41 chr12:8875200-8879200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr12:8875400-8881600 Weak transcription Primary B cells from cord blood blood
43 chr12:8875400-8884000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr12:8875600-8878800 Weak transcription H9 Cell Line embryonic stem cell
45 chr12:8875600-8880600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr12:8875600-8881400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr12:8875600-8894800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr12:8875600-8895000 Weak transcription HSMMtube muscle
49 chr12:8875800-8933200 Weak transcription Fetal Kidney kidney
50 chr12:8876000-8887600 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015