Variant report

Variant	rs10842471
Chromosome Location	chr12:25267940-25267941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10505959	0.88[ASN][1000 genomes]
rs10505960	0.83[AFR][1000 genomes]
rs10771165	0.80[ASN][1000 genomes]
rs10771169	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10771171	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10842463	0.80[ASN][1000 genomes]
rs10842464	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10842467	0.88[ASN][1000 genomes]
rs10842468	0.88[ASN][1000 genomes]
rs10842469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10842470	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10842473	0.83[AFR][1000 genomes]
rs10842475	0.82[AFR][1000 genomes]
rs10842478	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10842490	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10842491	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11047825	0.80[ASN][1000 genomes]
rs11047843	0.92[ASN][1000 genomes]
rs11047846	0.85[AFR][1000 genomes]
rs11047852	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11047854	0.82[AFR][1000 genomes]
rs11047855	0.82[AFR][1000 genomes]
rs11047856	0.82[AFR][1000 genomes]
rs11834088	0.80[ASN][1000 genomes]
rs12228364	0.80[ASN][1000 genomes]
rs12228365	0.80[ASN][1000 genomes]
rs12228638	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12424685	0.82[AFR][1000 genomes]
rs12818169	0.82[AFR][1000 genomes]
rs12828609	0.82[AFR][1000 genomes]
rs12830058	0.82[AFR][1000 genomes]
rs1497253	0.80[ASN][1000 genomes]
rs17386824	0.90[ASN][1000 genomes]
rs2291365	0.92[AFR][1000 genomes]
rs2352782	0.82[AFR][1000 genomes]
rs2352784	0.88[AFR][1000 genomes]
rs4589388	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4963850	0.92[AFR][1000 genomes]
rs6487456	0.92[AFR][1000 genomes]
rs7133904	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7134616	0.90[ASN][1000 genomes]
rs7303669	0.80[ASN][1000 genomes]
rs7960092	0.85[ASN][1000 genomes]
rs7964195	0.80[ASN][1000 genomes]
rs7971062	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7971288	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7972632	0.88[ASN][1000 genomes]
rs7976145	0.88[ASN][1000 genomes]
rs7976254	0.88[ASN][1000 genomes]
rs7976355	0.88[ASN][1000 genomes]
rs7977670	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469169	chr12:24692383-25357680	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv557775	chr12:24692383-25357680	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv932477	chr12:24705151-25346677	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1067577	chr12:24791283-25346677	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv529514	chr12:24791283-25346677	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv1041218	chr12:24972019-25304356	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv557796	chr12:25266203-25306458	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25251800-25274600	Weak transcription	Pancreas	Pancrea
2	chr12:25261000-25268400	Weak transcription	Liver	Liver
3	chr12:25263600-25268600	Weak transcription	GM12878-XiMat	blood
4	chr12:25263800-25288800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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