Variant report

Variant	rs10843290
Chromosome Location	chr12:29151672-29151673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10843296	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10843297	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11049991	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11049997	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11050025	0.82[CEU][hapmap]
rs12366697	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34331981	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29149400-29152600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:29149400-29153200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:29151200-29152400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr12:29151200-29152600	Enhancers	Liver	Liver
5	chr12:29151400-29151800	Enhancers	Gastric	stomach
6	chr12:29151400-29152000	Enhancers	NHDF-Ad	bronchial
7	chr12:29151400-29152400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:29151400-29152400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:29151400-29152400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr12:29151400-29152400	Enhancers	HMEC	breast
11	chr12:29151600-29151800	Enhancers	Adipose Nuclei	Adipose
12	chr12:29151600-29152200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr12:29151600-29152400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:29151600-29152400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr12:29151600-29152400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr12:29151600-29152400	Enhancers	Right Atrium	heart
17	chr12:29151600-29152400	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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