Variant report

Variant	rs10843402
Chromosome Location	chr12:29539932-29539933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29534214..29536521-chr12:29538492..29540922,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10082724	1.00[YRI][hapmap]
rs10450679	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1052583	0.82[LWK][hapmap]
rs10743651	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10743652	0.90[JPT][hapmap]
rs10771512	0.84[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs10843388	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10843393	1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1120528	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs1836861	0.80[MEX][hapmap]
rs1991113	0.81[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs2194517	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs3782507	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3782508	0.87[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4370971	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs6487792	0.81[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs6487797	0.81[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs6487799	0.90[ASN][1000 genomes]
rs6487802	0.87[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6487803	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7134187	0.87[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7299648	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7308534	0.87[JPT][hapmap]
rs7311081	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs7954990	0.82[ASN][1000 genomes]
rs7968167	0.82[ASN][1000 genomes]
rs7968883	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs7972032	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7976667	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9669514	0.82[ASN][1000 genomes]
rs9738165	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29535600-29542600	Weak transcription	Hela-S3	cervix
2	chr12:29535600-29543400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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