Variant report

Variant	rs10843523
Chromosome Location	chr12:29994754-29994755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10743676	0.83[ASN][1000 genomes]
rs10743677	0.88[ASN][1000 genomes]
rs10743680	0.88[ASN][1000 genomes]
rs10771582	0.84[ASN][1000 genomes]
rs10843509	0.88[ASN][1000 genomes]
rs10843513	0.88[ASN][1000 genomes]
rs10843517	0.91[ASN][1000 genomes]
rs10843518	0.91[ASN][1000 genomes]
rs11050438	0.88[ASN][1000 genomes]
rs11050442	0.88[ASN][1000 genomes]
rs11050447	0.88[ASN][1000 genomes]
rs11050452	0.88[ASN][1000 genomes]
rs11050458	0.90[ASN][1000 genomes]
rs11050482	0.90[ASN][1000 genomes]
rs11050483	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12581400	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1370872	0.90[ASN][1000 genomes]
rs1370873	0.90[ASN][1000 genomes]
rs1438509	0.90[ASN][1000 genomes]
rs1530068	0.90[ASN][1000 genomes]
rs1551929	0.88[ASN][1000 genomes]
rs1595523	0.98[ASN][1000 genomes]
rs1595525	0.98[ASN][1000 genomes]
rs1595527	0.98[ASN][1000 genomes]
rs16934976	0.88[ASN][1000 genomes]
rs17047	0.88[ASN][1000 genomes]
rs2118640	0.89[ASN][1000 genomes]
rs2200272	0.89[ASN][1000 genomes]
rs2200273	0.89[ASN][1000 genomes]
rs2200274	0.88[ASN][1000 genomes]
rs2350669	0.89[ASN][1000 genomes]
rs2350670	0.82[ASN][1000 genomes]
rs55976402	0.94[ASN][1000 genomes]
rs56248200	0.94[ASN][1000 genomes]
rs60515177	0.90[ASN][1000 genomes]
rs6487850	0.90[ASN][1000 genomes]
rs6487851	0.89[ASN][1000 genomes]
rs7132819	0.89[ASN][1000 genomes]
rs7306759	0.98[ASN][1000 genomes]
rs7952945	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv469191	chr12:29939628-30098770	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv557958	chr12:29939628-30098770	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv526146	chr12:29989292-30112823	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29991600-29997600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:29994000-29996600	Enhancers	Fetal Brain Male	brain
3	chr12:29994200-29995000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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