Variant report

Variant	rs10844090
Chromosome Location	chr12:32155435-32155436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:32155281-32156236	PANC-1	pancreas:	n/a	n/a
2	POLR2A	chr12:32155270-32156582	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr12:32155346-32156105	HepG2	liver:	n/a	n/a
4	POLR2A	chr12:32155259-32155600	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr12:32155293-32155531	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr12:32155263-32156567	ECC-1	luminal epithelium:	n/a	n/a
7	POLR2A	chr12:32155346-32156472	GM12878	blood:	n/a	n/a
8	POLR2A	chr12:32155291-32156516	K562	blood:	n/a	n/a
9	POLR2A	chr12:32155270-32156492	PANC-1	pancreas:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C12orf35-6	chr12:32155165-32157256	NONHSAT027601

Variant related genes	Relation type
ENSG00000257094	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7296677	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558100	chr12:31866833-32185924	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1045464	chr12:31869888-32183792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv541447	chr12:31869888-32183792	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	esv3430326	chr12:32142734-32216569	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv3410287	chr12:32142734-32219420	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv521398	chr12:32148915-32156716	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv976030	chr12:32153446-32307541	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv983498	chr12:32153446-32388092	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32135000-32156000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:32135000-32156400	Weak transcription	Gastric	stomach
3	chr12:32137200-32158600	Weak transcription	HUVEC	blood vessel
4	chr12:32140200-32156200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr12:32140800-32156600	Strong transcription	Thymus	Thymus
6	chr12:32141400-32156200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:32142200-32155800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:32143200-32156200	Strong transcription	Primary T cells from cord blood	blood
9	chr12:32143800-32158400	Weak transcription	Fetal Heart	heart
10	chr12:32144000-32155600	Weak transcription	Small Intestine	intestine
11	chr12:32144400-32155800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:32145800-32155600	Weak transcription	Stomach Mucosa	stomach
13	chr12:32148800-32155800	Weak transcription	Colonic Mucosa	Colon
14	chr12:32149000-32155800	Strong transcription	Fetal Brain Female	brain
15	chr12:32149400-32155600	Weak transcription	Fetal Brain Male	brain
16	chr12:32151000-32156200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr12:32151200-32155600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr12:32151200-32155600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:32151200-32155600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr12:32151200-32156000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr12:32151200-32156000	Weak transcription	Psoas Muscle	Psoas
22	chr12:32151200-32158000	Weak transcription	GM12878-XiMat	blood
23	chr12:32151200-32162400	Weak transcription	Fetal Kidney	kidney
24	chr12:32151200-32163400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr12:32151200-32164400	Weak transcription	Brain Anterior Caudate	brain
26	chr12:32151400-32160000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr12:32151600-32158600	Weak transcription	Right Ventricle	heart
28	chr12:32151800-32155600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr12:32151800-32155800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr12:32151800-32155800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr12:32152000-32155800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr12:32152400-32155600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr12:32152400-32155800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr12:32152400-32158600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr12:32152400-32162600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr12:32152600-32155800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr12:32152600-32156200	Strong transcription	Primary B cells from cord blood	blood
38	chr12:32152600-32156200	Weak transcription	Brain Angular Gyrus	brain
39	chr12:32152800-32155600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr12:32152800-32155800	Weak transcription	Aorta	Aorta
41	chr12:32152800-32155800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr12:32152800-32156200	Weak transcription	Brain Germinal Matrix	brain
43	chr12:32152800-32158600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr12:32152800-32162000	Weak transcription	Pancreas	Pancrea
45	chr12:32152800-32165600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr12:32152800-32165600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr12:32153000-32156200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr12:32153000-32156200	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr12:32153200-32156000	Weak transcription	Lung	lung
50	chr12:32154000-32156400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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