Variant report

Variant	rs10844176
Chromosome Location	chr12:32456433-32456434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:31882281..31884282-chr12:32455901..32458701,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10771932	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10771933	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10771934	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844171	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051914	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051916	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051917	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11051918	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051919	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12228804	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300478	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12307423	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12317439	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12317547	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12321268	0.89[AFR][1000 genomes]
rs28514337	0.82[AFR][1000 genomes]
rs56880250	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60404345	0.84[AFR][1000 genomes]
rs7307695	1.00[JPT][hapmap]
rs7970001	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs7970425	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs7970657	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs7973680	0.88[AFR][1000 genomes]
rs7974157	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9988933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv558171	chr12:32287259-32559693	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832366	chr12:32328559-32511360	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32427000-32458600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:32427000-32459400	Weak transcription	Aorta	Aorta
3	chr12:32427000-32463000	Weak transcription	NHLF	lung
4	chr12:32427200-32463000	Weak transcription	Fetal Intestine Small	intestine
5	chr12:32440200-32458600	Weak transcription	Thymus	Thymus
6	chr12:32443400-32461000	Weak transcription	Primary T cells from cord blood	blood
7	chr12:32443600-32458600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:32443600-32458600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr12:32443600-32458600	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:32443600-32458600	Weak transcription	NH-A	brain
11	chr12:32443600-32458800	Weak transcription	HMEC	breast
12	chr12:32443600-32461200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr12:32443600-32463200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr12:32443600-32465000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr12:32443800-32458400	Weak transcription	HSMM	muscle
16	chr12:32443800-32458600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:32443800-32458600	Weak transcription	Ovary	ovary
18	chr12:32443800-32460200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr12:32443800-32464600	Weak transcription	NHDF-Ad	bronchial
20	chr12:32443800-32464800	Weak transcription	Brain Substantia Nigra	brain
21	chr12:32443800-32480400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr12:32444000-32460600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:32444200-32465000	Weak transcription	Hela-S3	cervix
24	chr12:32445200-32458800	Weak transcription	Fetal Stomach	stomach
25	chr12:32445400-32464000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr12:32445600-32458600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:32445600-32463600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr12:32445800-32464800	Weak transcription	Brain Hippocampus Middle	brain
29	chr12:32446000-32461600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr12:32447000-32463000	Weak transcription	Brain Germinal Matrix	brain
31	chr12:32447400-32463000	Weak transcription	Fetal Thymus	thymus
32	chr12:32447600-32465000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr12:32447800-32458600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr12:32448200-32463000	Weak transcription	HUVEC	blood vessel
35	chr12:32448400-32458600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr12:32448400-32463200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr12:32448600-32458800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr12:32448600-32461000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr12:32448600-32462600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr12:32449000-32458600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr12:32449000-32463000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr12:32449200-32458600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr12:32449200-32458600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr12:32449200-32458600	Weak transcription	Osteobl	bone
45	chr12:32449200-32480400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr12:32449600-32490200	Weak transcription	HSMMtube	muscle
47	chr12:32449800-32458600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr12:32449800-32462400	Weak transcription	Fetal Intestine Large	intestine
49	chr12:32450000-32458000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr12:32450000-32462800	Weak transcription	Pancreas	Pancrea

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