Variant report

Variant	rs10845000
Chromosome Location	chr12:10033226-10033227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10772221	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11053492	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2034337	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2034339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4764048	0.87[AMR][1000 genomes]
rs7135834	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7304779	0.84[AMR][1000 genomes]
rs7312799	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7316203	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs935537	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044587	chr12:10029514-10123414	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523050	chr12:10031880-10124373	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10025600-10033400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:10032800-10033600	Enhancers	Hela-S3	cervix
3	chr12:10033000-10033400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:10033000-10033400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:10033000-10033600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:10033000-10033600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr12:10033000-10034400	Enhancers	Dnd41	blood
8	chr12:10033200-10033800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr12:10033200-10033800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr12:10033200-10034400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr12:10033200-10035000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr12:10033200-10035000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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