Variant report

Variant	rs10845086
Chromosome Location	chr12:10400355-10400356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10772249	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10772251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10845084	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10845085	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10845088	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10845089	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10845090	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10845091	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11053699	0.99[EUR][1000 genomes]
rs11053704	0.99[EUR][1000 genomes]
rs11053711	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11053712	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12370398	0.99[EUR][1000 genomes]
rs3898120	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3898122	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4237965	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4329754	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4763478	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55855636	0.99[EUR][1000 genomes]
rs56146423	0.99[EUR][1000 genomes]
rs56374289	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61919791	0.99[EUR][1000 genomes]
rs61919792	0.99[EUR][1000 genomes]
rs61919793	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7304038	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7309431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953558	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7978029	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
2	chr12:10395800-10402400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:10397200-10401800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr12:10397200-10402200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:10397200-10402400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr12:10397200-10402400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr12:10397200-10402400	Weak transcription	Dnd41	blood
8	chr12:10397200-10403000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr12:10398800-10436200	Weak transcription	Placenta	Placenta
10	chr12:10399400-10405200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:10400200-10400400	Enhancers	Right Atrium	heart
12	chr12:10400200-10400400	Enhancers	GM12878-XiMat	blood
13	chr12:10400200-10400600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr12:10400200-10400800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr12:10400200-10400800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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