Variant report

Variant	rs10845173
Chromosome Location	chr12:10739036-10739037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10738663..10741560-chr12:10743717..10745225,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10845165	0.86[AFR][1000 genomes]
rs10845171	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10845172	0.93[AFR][1000 genomes]
rs10845174	0.81[ASN][1000 genomes]
rs11053860	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11053861	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053868	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053874	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12312462	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1915322	0.85[AFR][1000 genomes]
rs1915323	0.82[AFR][1000 genomes]
rs2125093	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2125096	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2417745	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2417746	0.85[AFR][1000 genomes]
rs2417748	0.85[AFR][1000 genomes]
rs2607885	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2607886	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2607887	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2607889	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2607890	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2607891	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2607892	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2607893	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2607895	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2607896	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2607898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682476	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3983544	0.93[AFR][1000 genomes]
rs4076336	0.81[ASN][1000 genomes]
rs4237929	0.81[ASN][1000 genomes]
rs4763552	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6488306	0.80[ASN][1000 genomes]
rs7137465	0.81[ASN][1000 genomes]
rs7358656	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7488589	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7953221	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039120	chr12:10675930-10755446	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10725600-10743600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:10725600-10765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:10725800-10743200	Weak transcription	NHDF-Ad	bronchial
4	chr12:10725800-10753400	Weak transcription	Osteobl	bone
5	chr12:10725800-10761400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr12:10726400-10743200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr12:10726400-10759800	Weak transcription	NHLF	lung
8	chr12:10726800-10756600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:10730000-10762000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr12:10730600-10764800	Weak transcription	Lung	lung
11	chr12:10730800-10746200	Weak transcription	Fetal Thymus	thymus
12	chr12:10730800-10758400	Weak transcription	NHEK	skin
13	chr12:10731200-10744000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr12:10731200-10756400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr12:10731400-10753200	Weak transcription	Primary B cells from cord blood	blood
16	chr12:10731600-10742400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr12:10731600-10760800	Weak transcription	Fetal Brain Female	brain
18	chr12:10732000-10759600	Weak transcription	Fetal Intestine Large	intestine
19	chr12:10732000-10759800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr12:10732200-10745800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr12:10732200-10759600	Weak transcription	Left Ventricle	heart
22	chr12:10732200-10761400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr12:10732200-10764800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr12:10732400-10743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr12:10732400-10759600	Weak transcription	Colon Smooth Muscle	Colon
26	chr12:10732400-10764200	Weak transcription	Pancreas	Pancrea
27	chr12:10732600-10759600	Weak transcription	HMEC	breast
28	chr12:10732800-10759600	Weak transcription	Brain Hippocampus Middle	brain
29	chr12:10733200-10740200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr12:10733400-10743800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr12:10733400-10746000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr12:10733400-10748000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr12:10733400-10759600	Weak transcription	HUVEC	blood vessel
34	chr12:10733600-10744200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr12:10733600-10759800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr12:10733800-10743800	Weak transcription	Adipose Nuclei	Adipose
37	chr12:10733800-10753400	Weak transcription	Dnd41	blood
38	chr12:10733800-10760000	Weak transcription	Fetal Brain Male	brain
39	chr12:10734000-10739600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr12:10734000-10742600	Weak transcription	Ovary	ovary
41	chr12:10734000-10747600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr12:10734000-10753200	Weak transcription	Liver	Liver
43	chr12:10734000-10759400	Weak transcription	Fetal Lung	lung
44	chr12:10734000-10764000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr12:10734000-10764600	Weak transcription	Thymus	Thymus
46	chr12:10734200-10743200	Weak transcription	Primary T cells from cord blood	blood
47	chr12:10734200-10743200	Weak transcription	A549	lung
48	chr12:10734200-10743200	Weak transcription	HSMM	muscle
49	chr12:10734200-10743800	Weak transcription	Aorta	Aorta
50	chr12:10734200-10743800	Weak transcription	GM12878-XiMat	blood

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