Variant report

Variant	rs10845200
Chromosome Location	chr12:10824855-10824856
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10845198	0.88[CEU][hapmap];0.80[AMR][1000 genomes]
rs7297091	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7967162	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7968284	0.88[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1050613	chr12:10809805-10844399	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10819000-10825400	Weak transcription	HMEC	breast
2	chr12:10820400-10825200	Weak transcription	NHDF-Ad	bronchial
3	chr12:10821400-10825000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:10821600-10825000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr12:10821600-10825200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr12:10821600-10826000	Weak transcription	NHEK	skin
7	chr12:10821600-10826400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr12:10821800-10825000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr12:10821800-10825200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:10821800-10825200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:10821800-10825400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr12:10821800-10825400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr12:10823800-10826000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr12:10823800-10826400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr12:10824000-10825400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:10824200-10825000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr12:10824200-10826800	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr12:10824400-10825000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr12:10824400-10825800	Enhancers	Stomach Mucosa	stomach
20	chr12:10824600-10825000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr12:10824600-10825000	Enhancers	Primary T cells fromperipheralblood	blood
22	chr12:10824600-10825000	Flanking Active TSS	HUVEC	blood vessel
23	chr12:10824600-10825600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr12:10824600-10825600	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr12:10824800-10825200	Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr12:10824800-10825200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr12:10824800-10825400	Enhancers	Placenta	Placenta
28	chr12:10824800-10825600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
29	chr12:10824800-10826000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr12:10824800-10826200	Active TSS	Colonic Mucosa	Colon
31	chr12:10824800-10826800	Active TSS	Rectal Mucosa Donor 31	rectum
32	chr12:10824800-10827000	Active TSS	Rectal Smooth Muscle	rectum

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