Variant report

Variant	rs10845556
Chromosome Location	chr12:12637349-12637350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:12636838..12639616-chr12:12764732..12766370,2	K562	blood:
2	chr12:12636858..12639097-chr12:12712585..12714151,2	MCF-7	breast:
3	chr12:12634486..12639853-chr12:12714024..12717789,5	K562	blood:

Variant related genes	Relation type
ENSG00000111269	Chromatin interaction
ENSG00000111266	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10845552	0.86[EUR][1000 genomes]
rs10845568	0.91[ASN][1000 genomes]
rs11054926	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11610879	0.91[ASN][1000 genomes]
rs933575	0.84[EUR][1000 genomes]
rs962927	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758295	chr12:12620654-12783124	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2759880	chr12:12620654-12783124	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12603800-12639200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:12610800-12658000	Weak transcription	NHDF-Ad	bronchial
3	chr12:12618400-12642200	Weak transcription	Stomach Mucosa	stomach
4	chr12:12621400-12645400	Weak transcription	Small Intestine	intestine
5	chr12:12621600-12646000	Weak transcription	Psoas Muscle	Psoas
6	chr12:12621600-12646200	Weak transcription	Brain Germinal Matrix	brain
7	chr12:12622600-12653800	Weak transcription	Fetal Heart	heart
8	chr12:12624000-12638000	Weak transcription	HMEC	breast
9	chr12:12626400-12639000	Strong transcription	Placenta	Placenta
10	chr12:12626600-12639200	Strong transcription	Liver	Liver
11	chr12:12626800-12640400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr12:12626800-12653600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:12627400-12639200	Strong transcription	HepG2	liver
14	chr12:12627400-12640000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:12627600-12640200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:12627600-12642400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr12:12627800-12646200	Weak transcription	Fetal Brain Male	brain
18	chr12:12628400-12639800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr12:12628600-12647600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr12:12628800-12655800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr12:12630600-12641200	Weak transcription	HSMM	muscle
22	chr12:12630600-12661200	Weak transcription	NHEK	skin
23	chr12:12630800-12637800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr12:12630800-12639000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr12:12630800-12639200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr12:12630800-12640000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr12:12630800-12640800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr12:12630800-12640800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr12:12630800-12641400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:12630800-12655800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr12:12630800-12658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr12:12630800-12658400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr12:12630800-12659600	Weak transcription	Esophagus	oesophagus
34	chr12:12630800-12681000	Weak transcription	Colonic Mucosa	Colon
35	chr12:12631000-12645200	Weak transcription	Gastric	stomach
36	chr12:12631400-12641000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr12:12631800-12639000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr12:12632000-12637800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr12:12632800-12658200	Weak transcription	Ovary	ovary
40	chr12:12633000-12640800	Weak transcription	A549	lung
41	chr12:12633000-12658600	Weak transcription	Fetal Kidney	kidney
42	chr12:12633200-12639000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr12:12633400-12638400	Weak transcription	Fetal Lung	lung
44	chr12:12633400-12638600	Weak transcription	Lung	lung
45	chr12:12633400-12648800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:12633600-12638200	Weak transcription	Colon Smooth Muscle	Colon
47	chr12:12633600-12641400	Weak transcription	Osteobl	bone
48	chr12:12634400-12638400	Weak transcription	Fetal Brain Female	brain
49	chr12:12634400-12639200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr12:12634400-12639200	Weak transcription	NH-A	brain

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