Variant report

Variant	rs10848538
Chromosome Location	chr12:1737580-1737581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10773969	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10773970	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12307093	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529398	chr12:941915-1741311	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042863	chr12:1163817-1902302	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv541345	chr12:1163817-1902302	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv898584	chr12:1607390-1783251	Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv826180	chr12:1614395-1759431	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv826181	chr12:1619798-1754941	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv832304	chr12:1710249-1868642	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv898587	chr12:1732295-1756642	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv898588	chr12:1736314-1755960	Bivalent Enhancer Enhancers Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	nsv556994	chr12:1737309-1743843	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:1715400-1738600	Weak transcription	Right Atrium	heart
2	chr12:1721800-1738600	Weak transcription	Fetal Brain Female	brain
3	chr12:1724000-1737600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:1732200-1738400	Weak transcription	Brain Anterior Caudate	brain
5	chr12:1732200-1738400	Weak transcription	Esophagus	oesophagus
6	chr12:1732400-1738000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:1733000-1744000	Weak transcription	K562	blood
8	chr12:1734600-1738200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr12:1734600-1738200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr12:1734600-1738400	Weak transcription	Colon Smooth Muscle	Colon
11	chr12:1734800-1737800	Weak transcription	HSMMtube	muscle
12	chr12:1734800-1738200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr12:1734800-1738200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr12:1734800-1738200	Weak transcription	HSMM	muscle
15	chr12:1734800-1738200	Weak transcription	NHLF	lung
16	chr12:1734800-1738400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:1734800-1738400	Weak transcription	Pancreas	Pancrea
18	chr12:1735000-1737600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr12:1735000-1737600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr12:1735000-1738200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr12:1735000-1738400	Weak transcription	NH-A	brain
22	chr12:1735200-1737600	Weak transcription	Fetal Stomach	stomach
23	chr12:1735200-1737800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr12:1735200-1738400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr12:1735400-1738000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr12:1735400-1738000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr12:1735400-1738200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr12:1735400-1738200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr12:1735400-1738400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr12:1736200-1738000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr12:1736600-1737800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr12:1736600-1738600	Weak transcription	Ovary	ovary
33	chr12:1736800-1737800	Strong transcription	Osteobl	bone
34	chr12:1737000-1737800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr12:1737200-1737800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr12:1737200-1737800	Weak transcription	NHDF-Ad	bronchial
37	chr12:1737200-1738200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr12:1737400-1737600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
39	chr12:1737400-1737800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
40	chr12:1737400-1738000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr12:1737400-1738400	Bivalent Enhancer	Fetal Muscle Leg	muscle

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