Variant report

Variant	rs10848587
Chromosome Location	chr12:2002362-2002363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10774003	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10774004	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10848591	0.89[CHB][hapmap]
rs10848593	0.81[EUR][1000 genomes]
rs11062012	0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11062018	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11062020	0.90[EUR][1000 genomes]
rs11513703	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap]
rs11513705	1.00[CHB][hapmap]
rs16928921	0.91[CEU][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs2041140	0.80[CEU][hapmap]
rs2041141	0.80[CEU][hapmap]
rs2108633	0.93[ASN][1000 genomes]
rs2108639	1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2190767	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs2190769	0.81[CHB][hapmap];0.86[CHD][hapmap];0.89[MKK][hapmap]
rs2906893	0.91[CHD][hapmap]
rs4765645	0.80[CEU][hapmap]
rs4765859	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4765864	0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4766424	0.80[CEU][hapmap]
rs7131989	0.85[ASN][1000 genomes]
rs7135033	0.88[CHB][hapmap]
rs7294328	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs758159	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs886942	0.80[CEU][hapmap]
rs9668804	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948480	chr12:1776217-2284333	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv898598	chr12:1939252-2215448	Strong transcription Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1046388	chr12:1964846-2034887	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043329	chr12:1986238-2034887	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv518786	chr12:1998044-2016322	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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