Variant report

Variant	rs10849684
Chromosome Location	chr12:120064275-120064276
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10744740	0.86[ASN][1000 genomes]
rs10744741	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10744742	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10774505	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10774507	0.85[AMR][1000 genomes]
rs10849679	0.84[ASN][1000 genomes]
rs10849682	0.88[ASN][1000 genomes]
rs10849683	0.90[ASN][1000 genomes]
rs10849685	0.82[AMR][1000 genomes]
rs11064842	0.82[ASN][1000 genomes]
rs11064843	0.81[ASN][1000 genomes]
rs11064855	0.86[ASN][1000 genomes]
rs11064856	0.85[AMR][1000 genomes]
rs11064858	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1154836	0.82[AMR][1000 genomes]
rs12708371	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12827937	0.85[ASN][1000 genomes]
rs1303904	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1319529	0.82[AMR][1000 genomes]
rs1476453	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1858982	0.81[AMR][1000 genomes]
rs2078938	0.82[AMR][1000 genomes]
rs2157806	0.85[ASN][1000 genomes]
rs2301654	0.82[AMR][1000 genomes]
rs2893796	0.85[ASN][1000 genomes]
rs2893805	0.81[AMR][1000 genomes]
rs3847956	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4766944	0.85[AMR][1000 genomes]
rs4766945	0.82[AMR][1000 genomes]
rs4767832	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4767833	0.84[ASN][1000 genomes]
rs6490260	0.82[AMR][1000 genomes]
rs7138785	0.82[AMR][1000 genomes]
rs7306273	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7310741	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7316295	0.88[ASN][1000 genomes]
rs739423	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7957284	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7958547	0.81[AFR][1000 genomes]
rs7965791	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7978341	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7981024	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9668717	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832529	chr12:119863378-120071646	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1052595	chr12:119992580-120132038	Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv541616	chr12:119992580-120132038	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120056400-120064400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr12:120056800-120064600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:120059200-120083400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:120060200-120064400	Weak transcription	Liver	Liver
5	chr12:120060800-120064400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr12:120062800-120065800	Enhancers	Fetal Muscle Leg	muscle
7	chr12:120063000-120068400	Weak transcription	Psoas Muscle	Psoas
8	chr12:120063400-120064400	Weak transcription	HSMM	muscle
9	chr12:120063400-120064600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr12:120063400-120064800	Weak transcription	Fetal Stomach	stomach
11	chr12:120063800-120067400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr12:120064000-120065600	Enhancers	Ovary	ovary
13	chr12:120064200-120065000	Enhancers	HSMMtube	muscle

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