Variant report

Variant	rs10850704
Chromosome Location	chr12:117141688-117141689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117141137..117141688-chr12:117462896..117463565,2	K562	blood:
2	chr12:117140715..117144764-chr12:117146137..117149297,3	MCF-7	breast:
3	chr12:117141331..117144300-chr12:117150494..117153088,2	K562	blood:
4	chr12:117141151..117142686-chr12:117143634..117146488,2	K562	blood:
5	chr12:117133986..117137596-chr12:117137852..117142272,5	MCF-7	breast:
6	chr12:117141368..117142988-chr12:117318635..117321164,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257654	Chromatin interaction
ENSG00000135116	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10850703	0.92[ASN][1000 genomes]
rs10850706	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1566017	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1566019	0.93[ASN][1000 genomes]
rs6490085	0.84[ASN][1000 genomes]
rs748146	0.91[ASN][1000 genomes]
rs748381	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117132200-117147000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:117132400-117147000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:117134200-117146600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:117135600-117147000	Weak transcription	Gastric	stomach
5	chr12:117135800-117146400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:117136600-117145600	Weak transcription	Brain Germinal Matrix	brain
7	chr12:117136600-117145600	Weak transcription	Right Ventricle	heart
8	chr12:117136600-117146600	Weak transcription	Ovary	ovary
9	chr12:117136800-117144800	Weak transcription	Fetal Thymus	thymus
10	chr12:117136800-117146400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr12:117136800-117146400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr12:117137800-117146600	Weak transcription	Pancreas	Pancrea
13	chr12:117141200-117141800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr12:117141400-117145400	Weak transcription	GM12878-XiMat	blood
15	chr12:117141400-117145600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr12:117141400-117145600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:117141400-117146400	Weak transcription	Brain Anterior Caudate	brain
18	chr12:117141400-117146400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr12:117141400-117146400	Weak transcription	Dnd41	blood
20	chr12:117141400-117146600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr12:117141400-117147200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr12:117141600-117142200	Weak transcription	Lung	lung
23	chr12:117141600-117146200	Weak transcription	Brain Hippocampus Middle	brain
24	chr12:117141600-117146200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr12:117141600-117146200	Weak transcription	Brain Substantia Nigra	brain
26	chr12:117141600-117146400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr12:117141600-117146400	Weak transcription	Brain Angular Gyrus	brain
28	chr12:117141600-117146400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr12:117141600-117146400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr12:117141600-117146600	Weak transcription	Liver	Liver
31	chr12:117141600-117150000	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links