Variant report

Variant	rs10850761
Chromosome Location	chr12:117549426-117549427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10850759	0.80[ASN][1000 genomes]
rs10850762	0.95[ASN][1000 genomes]
rs11068338	0.80[ASN][1000 genomes]
rs11068343	0.84[EUR][1000 genomes]
rs12227113	0.84[EUR][1000 genomes]
rs1316314	0.81[EUR][1000 genomes]
rs1344403	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3736417	0.82[AMR][1000 genomes]
rs7297162	0.89[ASN][1000 genomes]
rs7956935	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10850761	TESC	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117537600-117556400	Weak transcription	Right Atrium	heart
2	chr12:117548200-117549600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:117548200-117550600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:117548200-117551800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:117548400-117550400	Enhancers	Primary hematopoietic stem cells	blood
6	chr12:117548400-117550800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:117548800-117550000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:117549000-117550000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr12:117549200-117550000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr12:117549200-117550000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr12:117549200-117550000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:117549200-117550000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr12:117549200-117550000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:117549200-117550000	Enhancers	Brain Germinal Matrix	brain
15	chr12:117549200-117550000	Enhancers	Pancreas	Pancrea
16	chr12:117549200-117550000	Flanking Bivalent TSS/Enh	HepG2	liver
17	chr12:117549200-117550200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr12:117549200-117550200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr12:117549200-117550200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:117549200-117550200	Enhancers	Fetal Muscle Leg	muscle
21	chr12:117549200-117550200	Bivalent Enhancer	Fetal Stomach	stomach
22	chr12:117549200-117550400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:117549200-117550400	Enhancers	Fetal Lung	lung
24	chr12:117549200-117550400	Enhancers	Thymus	Thymus
25	chr12:117549200-117550600	Enhancers	Fetal Thymus	thymus
26	chr12:117549400-117549800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:117549400-117550000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr12:117549400-117550000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr12:117549400-117550200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr12:117549400-117550200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr12:117549400-117550200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr12:117549400-117550200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr12:117549400-117550200	Enhancers	Fetal Brain Male	brain
34	chr12:117549400-117550200	Enhancers	K562	blood
35	chr12:117549400-117550400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr12:117549400-117550600	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links