Variant report

Variant	rs10850770
Chromosome Location	chr12:117571041-117571042
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117563780..117567110-chr12:117568680..117571095,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11068349	1.00[CHD][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11068351	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12230542	1.00[EUR][1000 genomes]
rs12312388	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16947317	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv899542	chr12:117549739-117623136	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117559800-117582200	Weak transcription	Brain Angular Gyrus	brain
2	chr12:117560000-117581000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:117564200-117571800	Weak transcription	Fetal Brain Male	brain
4	chr12:117566400-117582200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:117566800-117582200	Weak transcription	Brain Substantia Nigra	brain
6	chr12:117566800-117583400	Weak transcription	Fetal Kidney	kidney
7	chr12:117568400-117582200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:117568400-117582200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:117568600-117572200	Weak transcription	Placenta	Placenta
10	chr12:117568600-117578800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:117568600-117583200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:117568600-117588400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:117568800-117571800	Weak transcription	A549	lung
14	chr12:117568800-117579200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:117569200-117571800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:117569400-117571800	Weak transcription	Pancreas	Pancrea
17	chr12:117570200-117571400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr12:117570400-117572800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr12:117570600-117574000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr12:117570800-117573000	Enhancers	Fetal Thymus	thymus
21	chr12:117571000-117573200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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