Variant report

Variant	rs10850957
Chromosome Location	chr12:118526648-118526649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:118498174..118502198-chr12:118525626..118528762,4	MCF-7	breast:
2	chr12:118526226..118529147-chr12:118529412..118532187,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176871	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10850958	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11068818	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4767657	0.80[EUR][1000 genomes]
rs4767658	0.82[CEU][hapmap]
rs55636836	0.84[ASN][1000 genomes]
rs6490165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957463	0.82[CEU][hapmap]
rs7958110	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053785	chr12:118490955-118874194	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv560389	chr12:118502467-118564087	Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv899546	chr12:118515230-118563982	Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118500600-118535200	Weak transcription	Brain Substantia Nigra	brain
2	chr12:118500800-118539600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:118500800-118539800	Weak transcription	Right Ventricle	heart
4	chr12:118500800-118540800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr12:118501000-118527400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr12:118501000-118530600	Weak transcription	Brain Angular Gyrus	brain
7	chr12:118501000-118533800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr12:118501000-118539600	Weak transcription	Psoas Muscle	Psoas
9	chr12:118501000-118540200	Weak transcription	HUVEC	blood vessel
10	chr12:118501000-118540800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr12:118501000-118540800	Weak transcription	NH-A	brain
12	chr12:118501200-118536000	Weak transcription	Right Atrium	heart
13	chr12:118501200-118540400	Weak transcription	Brain Germinal Matrix	brain
14	chr12:118501200-118540800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr12:118501200-118541000	Weak transcription	Aorta	Aorta
16	chr12:118501600-118540400	Weak transcription	NHLF	lung
17	chr12:118501800-118527000	Weak transcription	NHEK	skin
18	chr12:118501800-118533200	Weak transcription	Hela-S3	cervix
19	chr12:118502200-118540800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr12:118502200-118540800	Weak transcription	Brain Anterior Caudate	brain
21	chr12:118502600-118536200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr12:118509000-118538400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr12:118509200-118528000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr12:118509400-118528800	Weak transcription	NHDF-Ad	bronchial
25	chr12:118511800-118534400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr12:118511800-118539600	Weak transcription	Pancreas	Pancrea
27	chr12:118513400-118534200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr12:118514600-118540400	Weak transcription	Fetal Heart	heart
29	chr12:118515800-118540800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr12:118515800-118540800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr12:118516000-118539800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr12:118517400-118535600	Weak transcription	Colonic Mucosa	Colon
33	chr12:118517600-118535800	Weak transcription	Placenta	Placenta
34	chr12:118517600-118540000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr12:118517600-118540800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr12:118517600-118540800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr12:118517800-118528400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr12:118518600-118540000	Weak transcription	Fetal Muscle Leg	muscle
39	chr12:118518600-118540800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr12:118519000-118540400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr12:118519000-118540800	Weak transcription	Colon Smooth Muscle	Colon
42	chr12:118519200-118539800	Weak transcription	Left Ventricle	heart
43	chr12:118519400-118534600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr12:118519400-118540600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr12:118519600-118528000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr12:118519600-118536000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr12:118519600-118540200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr12:118519800-118527200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr12:118520000-118527000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr12:118520000-118528200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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