Variant report

Variant	rs10851400
Chromosome Location	chr15:41250937-41250938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41196325..41199038-chr15:41249965..41253557,4	K562	blood:
2	chr15:41221931..41225050-chr15:41249351..41252849,3	K562	blood:
3	chr15:41235426..41238056-chr15:41249028..41251261,4	MCF-7	breast:
4	chr15:41221226..41223181-chr15:41249828..41251513,3	MCF-7	breast:
5	chr15:41231034..41235223-chr15:41248876..41252149,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128917	Chromatin interaction
ENSG00000251161	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11070312	0.87[EUR][1000 genomes]
rs11070313	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11070314	0.95[ASN][1000 genomes]
rs11557249	0.98[ASN][1000 genomes]
rs11853377	0.98[ASN][1000 genomes]
rs11854054	0.97[ASN][1000 genomes]
rs11857572	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12593739	0.92[ASN][1000 genomes]
rs1869908	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28575174	0.98[ASN][1000 genomes]
rs4924520	0.95[ASN][1000 genomes]
rs60588038	0.95[ASN][1000 genomes]
rs7174555	0.93[ASN][1000 genomes]
rs745299	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8042127	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs8042230	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv904106	chr15:41221067-41259523	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	esv1794127	chr15:41245289-41276158	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10851400	NDUFAF1	Cis_1M	lymphoblastoid	RTeQTL
rs10851400	NDUFAF1	cis	Muscle Skeletal	GTEx

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41246400-41251000	Enhancers	Pancreas	Pancrea
2	chr15:41246400-41251800	Weak transcription	Primary B cells from cord blood	blood
3	chr15:41246400-41251800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr15:41246400-41268200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:41246600-41252000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:41246600-41252000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:41246600-41252400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:41246600-41252600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:41246600-41253400	Enhancers	Fetal Muscle Leg	muscle
10	chr15:41246600-41258200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:41246600-41270000	Weak transcription	HUVEC	blood vessel
12	chr15:41246800-41251000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:41246800-41251200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:41246800-41251800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:41246800-41251800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:41246800-41253000	Weak transcription	A549	lung
17	chr15:41246800-41268000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr15:41246800-41268200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:41247400-41253600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:41247600-41251400	Enhancers	Psoas Muscle	Psoas
21	chr15:41248000-41251800	Weak transcription	Hela-S3	cervix
22	chr15:41248400-41254200	Weak transcription	Osteobl	bone
23	chr15:41248800-41251800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:41248800-41251800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr15:41248800-41251800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:41249000-41258400	Weak transcription	K562	blood
27	chr15:41249200-41251200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr15:41249200-41251800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:41249200-41252000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:41249200-41252000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:41249200-41252000	Weak transcription	Spleen	Spleen
32	chr15:41249200-41252800	Weak transcription	Fetal Intestine Small	intestine
33	chr15:41249400-41251400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr15:41249400-41251800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:41249400-41251800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:41249400-41252000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:41249400-41252200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr15:41249400-41266000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:41249400-41268000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:41249600-41258600	Weak transcription	NHLF	lung
41	chr15:41250000-41251400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr15:41250000-41252400	Weak transcription	Lung	lung
43	chr15:41250000-41258400	Weak transcription	Right Atrium	heart
44	chr15:41250000-41264400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:41250200-41251800	Enhancers	Fetal Muscle Trunk	muscle
46	chr15:41250200-41252600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr15:41250200-41253400	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr15:41250200-41255400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:41250400-41252400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr15:41250400-41252600	Weak transcription	Colonic Mucosa	Colon

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