Variant report

Variant	rs10851499
Chromosome Location	chr15:51537127-51537128
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:51536475-51537142	GM12878	blood:	n/a	chr15:51536977-51536988
2	CEBPB	chr15:51536672-51537294	HCT-116	colon:	n/a	chr15:51536977-51536988
3	CEBPB	chr15:51536796-51537178	IMR90	lung:	n/a	chr15:51536977-51536988
4	RUNX3	chr15:51536392-51537138	GM12878	blood:	n/a	chr15:51536653-51536662
5	EP300	chr15:51536860-51537163	Hela-S3	cervix:	n/a	n/a
6	NFIC	chr15:51536384-51537133	GM12878	blood:	n/a	n/a
7	CEBPB	chr15:51536804-51537178	Hela-S3	cervix:	n/a	chr15:51536977-51536988
8	CEBPB	chr15:51536794-51537165	A549	lung:	n/a	chr15:51536977-51536988
9	CEBPB	chr15:51536798-51537188	K562	blood:	n/a	chr15:51536977-51536988
10	CEBPB	chr15:51536811-51537172	HepG2	liver:	n/a	chr15:51536977-51536988

No.	Distal block	Cell Line	Cell type
1	chr15:51535935..51537605-chr15:51539131..51540718,2	MCF-7	breast:
2	chr15:51534794..51537760-chr15:51568479..51570855,2	MCF-7	breast:
3	chr15:51533024..51534733-chr15:51535544..51538470,2	K562	blood:

Variant related genes	Relation type
CYP19A1	TF binding region
ENSG00000266593	Chromatin interaction
ENSG00000137869	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10459592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519297	0.86[ASN][1000 genomes]
rs1062033	0.86[ASN][1000 genomes]
rs1065778	0.88[ASN][1000 genomes]
rs10851498	0.96[ASN][1000 genomes]
rs11632036	0.88[ASN][1000 genomes]
rs11633715	0.88[ASN][1000 genomes]
rs11636667	0.88[ASN][1000 genomes]
rs11636686	0.88[ASN][1000 genomes]
rs12050772	0.86[ASN][1000 genomes]
rs12899068	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12900487	0.88[ASN][1000 genomes]
rs12907866	0.86[ASN][1000 genomes]
rs12908960	0.86[ASN][1000 genomes]
rs17523270	0.96[ASN][1000 genomes]
rs17523284	0.96[ASN][1000 genomes]
rs2414096	0.89[ASN][1000 genomes]
rs2414098	0.83[EUR][1000 genomes]
rs35241865	0.88[ASN][1000 genomes]
rs35808887	0.88[ASN][1000 genomes]
rs3759811	0.89[ASN][1000 genomes]
rs4775936	0.96[ASN][1000 genomes]
rs56097510	0.90[ASN][1000 genomes]
rs61018102	0.90[ASN][1000 genomes]
rs700518	0.89[ASN][1000 genomes]
rs7176330	0.89[ASN][1000 genomes]
rs767199	0.88[ASN][1000 genomes]
rs8041967	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1049644	chr15:51265447-51560445	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv34532	chr15:51276128-51752856	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	esv2757600	chr15:51352249-51783981	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51524800-51574000	Weak transcription	HepG2	liver
2	chr15:51533600-51542200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:51533800-51537400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:51534000-51542000	Strong transcription	Placenta	Placenta
5	chr15:51534800-51537600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:51535400-51538200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:51536200-51537200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:51536200-51537200	Enhancers	NHDF-Ad	bronchial
9	chr15:51536200-51538400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:51536600-51537200	Flanking Active TSS	GM12878-XiMat	blood
11	chr15:51536600-51537400	Enhancers	Osteobl	bone
12	chr15:51536800-51537200	Enhancers	HSMMtube	muscle
13	chr15:51536800-51537400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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