Variant report

Variant	rs10851510
Chromosome Location	chr15:52550897-52550898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52541572..52560373-chr15:52569752..52591000,64	MCF-7	breast:
2	chr15:52549166..52552176-chr15:52598023..52601011,3	MCF-7	breast:
3	chr15:52536664..52559220-chr15:52576974..52590204,72	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128833	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10851511	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070890	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17707198	1.00[CEU][hapmap]
rs4432216	1.00[CEU][hapmap]
rs4496072	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4514621	1.00[CEU][hapmap]
rs4774617	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4776031	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58479271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59060156	1.00[EUR][1000 genomes]
rs59211915	0.84[EUR][1000 genomes]
rs61367038	1.00[EUR][1000 genomes]
rs61551630	0.92[EUR][1000 genomes]
rs7165256	1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs7165320	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7172236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7180204	0.84[GIH][hapmap];1.00[TSI][hapmap]
rs9806461	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054372	chr15:52369078-52579464	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv542387	chr15:52369078-52579464	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52524400-52579400	Weak transcription	Small Intestine	intestine
2	chr15:52525800-52554000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:52536200-52553600	Weak transcription	Lung	lung
4	chr15:52536200-52553800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:52538000-52554600	Weak transcription	Colonic Mucosa	Colon
6	chr15:52539600-52553400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:52540000-52553800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:52542400-52553800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:52543600-52555400	Weak transcription	Liver	Liver
10	chr15:52546800-52553600	Weak transcription	Spleen	Spleen
11	chr15:52546800-52553800	Weak transcription	Esophagus	oesophagus
12	chr15:52547000-52552000	Weak transcription	Gastric	stomach
13	chr15:52547000-52553400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:52547000-52555800	Weak transcription	Fetal Intestine Large	intestine
15	chr15:52547600-52553800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:52547800-52553400	Weak transcription	HMEC	breast
17	chr15:52548200-52551000	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:52548400-52551000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr15:52548600-52552000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:52548800-52551000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:52548800-52551200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:52548800-52551200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:52548800-52551400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr15:52549000-52551000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr15:52549000-52551400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr15:52549000-52553200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:52549000-52553400	Weak transcription	Primary B cells from cord blood	blood
28	chr15:52549000-52553800	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr15:52549000-52557800	Weak transcription	Fetal Brain Male	brain
30	chr15:52549200-52552400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:52549200-52553600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:52549200-52553600	Weak transcription	Stomach Mucosa	stomach
33	chr15:52549200-52553600	Weak transcription	HUVEC	blood vessel
34	chr15:52549200-52553800	Weak transcription	Colon Smooth Muscle	Colon
35	chr15:52549200-52554000	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:52549400-52551000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr15:52549400-52551400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:52549400-52553000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr15:52549400-52553200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:52549400-52553400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr15:52549400-52553400	Weak transcription	GM12878-XiMat	blood
42	chr15:52549400-52554000	Weak transcription	Fetal Lung	lung
43	chr15:52549400-52567200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr15:52549600-52552000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr15:52549600-52553200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:52549600-52553200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:52549600-52553400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr15:52549600-52553400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr15:52549600-52553600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr15:52549600-52553600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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